Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e18f
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 33 0.13
U55364-5|AAQ23124.1| 368|Caenorhabditis elegans Prion-like-(q/n... 29 2.1
AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical ... 29 2.1
AF078157-1|AAG24071.1| 235|Caenorhabditis elegans Hypothetical ... 29 2.1
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 29 3.7
U64601-10|AAP40523.1| 91|Caenorhabditis elegans Hypothetical p... 28 4.8
U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-lik... 28 4.8
Z46343-4|CAA86460.1| 336|Caenorhabditis elegans Hypothetical pr... 28 6.4
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 27 8.4
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +1
Query: 148 NCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATDSTL 327
NC + TT S + T T A + T ST S ++TDST
Sbjct: 171 NCNVLTDIPVTTTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTT 230
Query: 328 SESTSPITLDSS 363
+EST+ T +S+
Sbjct: 231 TESTTESTTEST 242
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 139 SRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATD 318
S TTA+S +T+ S + T + + T ST S ++TD
Sbjct: 188 SSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTD 247
Query: 319 STLSESTSPIT 351
ST +ESTS T
Sbjct: 248 STTTESTSTST 258
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +1
Query: 121 AVLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATS 300
A T S T +++ +TT + + +T T + T +T S
Sbjct: 195 ATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTS-TSTDSTTTES 253
Query: 301 CGSATDSTLSESTSPITLDSS 363
++TDST +EST+ T +S+
Sbjct: 254 TSTSTDSTTTESTTESTTEST 274
>U55364-5|AAQ23124.1| 368|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform b protein.
Length = 368
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +3
Query: 42 MKFLVVFASCVLAVSA-GVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEY-EN 215
M+FL + + CVLAV+A + S ++ + Y S + A Q ++Y +N
Sbjct: 1 MQFLTILSVCVLAVAAQQQSAYSTNQQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 60
Query: 216 QGKGSIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQH 323
Q GS Q N + +N+ +Y + N Q+
Sbjct: 61 QQYGSTAQYNQNQM--QNQQNSNQYSTTSNMNNQQN 94
>AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical
protein F25E5.8b protein.
Length = 176
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 122 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 24
A S G+F S+ G G H EHH K H+ HS F
Sbjct: 25 ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61
>AF078157-1|AAG24071.1| 235|Caenorhabditis elegans Hypothetical
protein F25E5.8a protein.
Length = 235
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 122 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 24
A S G+F S+ G G H EHH K H+ HS F
Sbjct: 25 ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +1
Query: 130 TKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGS 309
T +S + +T +S VTTT ++ T T P TP +T+T+ +
Sbjct: 276 TTSSTTSTSTTTSVVTTTTVTSTTEPT-TSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTT 334
Query: 310 ATDSTLSESTSPIT 351
+ +T +T P T
Sbjct: 335 SASTTTISTTKPPT 348
>U64601-10|AAP40523.1| 91|Caenorhabditis elegans Hypothetical
protein M03F4.7b protein.
Length = 91
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 125 TAHASRGHFSDAGADGEHARREHHEKFHYH 36
TA AS H SD DGEH + + H+K + H
Sbjct: 13 TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41
>U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical
protein M03F4.7a protein.
Length = 314
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 125 TAHASRGHFSDAGADGEHARREHHEKFHYH 36
TA AS H SD DGEH + + H+K + H
Sbjct: 13 TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41
>AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-like
protein protein.
Length = 314
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 125 TAHASRGHFSDAGADGEHARREHHEKFHYH 36
TA AS H SD DGEH + + H+K + H
Sbjct: 13 TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41
>Z46343-4|CAA86460.1| 336|Caenorhabditis elegans Hypothetical
protein T23F11.5 protein.
Length = 336
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -3
Query: 625 LVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSPYASL 446
L NI+ + + S+ L L+ +I++ TLL + ++NF ++R FS + +
Sbjct: 7 LSSNISYDDPISFECDTSYDSGLELLKYIIQVTLLSINFILNFLIIRVTMFSKNNDFREN 66
Query: 445 SF 440
SF
Sbjct: 67 SF 68
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 327 QCAVRCRPTACSSTPWCSDSC 265
QC + C+PT + P C C
Sbjct: 225 QCTLECQPTCQQAVPQCQQQC 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,363,181
Number of Sequences: 27780
Number of extensions: 269539
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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