Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e17r
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   103   4e-23
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.7  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  103 bits (246), Expect = 4e-23
 Identities = 51/107 (47%), Positives = 66/107 (61%)
 Frame = -1

Query: 642 ASAIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLK 463
           A AIVV++TSG +A L SKYRP  PI+ VTR PQ ARQ HL RGV P++Y++   SDW K
Sbjct: 403 AKAIVVLSTSGNTARLCSKYRPSIPIVMVTRCPQRARQSHLNRGVYPVIYEKEPLSDWQK 462

Query: 462 DVDNRVQSGLRFGRQRGFVHPGDNAVVVTGWKQGSGFTNTVRVIQLE 322
           DVD RV  G +   +   +  GD  +V+ G   G G T+  R+   E
Sbjct: 463 DVDARVAYGCQQAYKMNILKKGDKIIVLQGAVGGKGHTSIFRLTVAE 509


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 636 AIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASD 472
           AIV ITTS     +L +Y+P          P+ A Q +      P++ +E  +SD
Sbjct: 109 AIVGITTSILKKRMLKEYQPAAEAPGAMEDPEQALQRNSLDDGAPLLPREGNSSD 163


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 527  TCLAVCGCLVTAMMGQRGRYLLSRCADL 610
            TCL  C   V A   +  +YL+SR +DL
Sbjct: 1221 TCLKTCISEVMAENKEPAKYLISRISDL 1248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,585
Number of Sequences: 5004
Number of extensions: 46720
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)