Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e17r
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908 48 6e-06
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598... 47 1e-05
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 46 3e-05
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223... 46 4e-05
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 45 6e-05
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 44 1e-04
11_01_0296 - 2222329-2222481,2222777-2222836,2222965-2223064,222... 41 0.001
12_01_0297 - 2244793-2244945,2245337-2245396,2245529-2245628,224... 40 0.002
03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328 40 0.003
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969... 40 0.003
05_03_0095 - 8349971-8350171,8350659-8351303 29 3.0
07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134 28 6.9
06_03_1435 - 30142679-30143013,30143101-30143266 28 9.1
>04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908
Length = 511
Score = 48.4 bits (110), Expect = 6e-06
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Frame = -1
Query: 735 LFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRCPIIAV 556
+F +++ P+ P A K A+ IVV+T G +A L++KYRPR PI++V
Sbjct: 365 VFKEMIRSAPLPMSPLESLASSAVRTANKAKAALIVVLTRGGTTAKLVAKYRPRVPILSV 424
Query: 555 TRHPQT-------------ARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQR 415
T AR +YRG++P++ + + + + + + L+ Q+
Sbjct: 425 VVPVLTTDSFDWTISSEGPARHSLIYRGLVPLLAEGSAKATDSESTEVILDAALKSAVQK 484
Query: 414 GFVHPGDNAVVV 379
PGD V +
Sbjct: 485 QLCKPGDAVVAL 496
>11_01_0724 +
5981680-5981748,5982301-5982397,5982496-5982593,
5983535-5983690,5983986-5984063,5984135-5984266,
5984856-5984936,5985442-5985510,5985597-5985686,
5986001-5986145,5986218-5986276,5986384-5986479,
5986561-5986628,5986704-5986803,5986910-5986966,
5987179-5987337
Length = 517
Score = 47.2 bits (107), Expect = 1e-05
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Frame = -1
Query: 732 FNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRCPIIAVT 553
F LV V P+ A K A+AIVV T SG++A L++KY+P P++AV
Sbjct: 369 FKKLVKHVGDPMPHEESVASSAVRTAMKVKAAAIVVFTFSGRAARLVAKYKPPMPVLAVV 428
Query: 552 -----------RHPQT--ARQVHLYRGVLPIVYQ-EPTASDWLKDVDNRVQSGLRFGRQR 415
R T ARQ RGV P++ E + L + ++ +GR
Sbjct: 429 FPREGSDPTKWRSYGTTQARQCFAARGVYPLMASTEEAETGGLTREEYGIKLAQNYGRSV 488
Query: 414 GFVHPGDNAVVVTGWKQGSGFTNTVRVIQLE 322
G + P D ++ Q G ++ V++I+ +
Sbjct: 489 GMLKPYDRLIIF----QKIGDSSVVKIIECD 515
>03_05_0640 - 26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = -1
Query: 636 AIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLKDV 457
AI V T G A LLS+ RP PI A T + + + ++LY GV+P+ Q P ++ ++
Sbjct: 1065 AIFVYTKYGHMASLLSRNRPNPPIFAFTDNANSRKSMNLYWGVIPL--QLPLSN----NM 1118
Query: 456 DNRVQSGLRFGRQRGFVHPGDNAVVV 379
++ ++ + +G V GD +VV
Sbjct: 1119 EDNFNQTIKLMKSKGSVKSGDTVLVV 1144
>10_08_0999 +
22121029-22121235,22121819-22122082,22122123-22122324,
22122456-22122590,22122668-22122778,22122871-22122959,
22123237-22123299,22123461-22123636,22123785-22123887,
22124286-22124461,22124625-22124733,22124851-22124943,
22126294-22126435,22126655-22126671
Length = 628
Score = 45.6 bits (103), Expect = 4e-05
Identities = 36/121 (29%), Positives = 57/121 (47%)
Frame = -1
Query: 645 LASAIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWL 466
L + I+V T +G A LLS YRP I A T + +++ LY+GV+PI + SD
Sbjct: 477 LCTPIIVFTRTGSMAVLLSHYRPSSTIFAFTNEERVKQRLALYQGVVPIYMK---FSDDA 533
Query: 465 KDVDNRVQSGLRFGRQRGFVHPGDNAVVVTGWKQGSGFTNTVRVIQLE**QSFKEDENRH 286
++ +R S L + FV GD +V + + IQ S K+ + +H
Sbjct: 534 EETFSRAISSLLNAQ---FVKEGDYVTLVQSGVKSIWREESTHHIQAAPELSRKDQQMKH 590
Query: 285 L 283
+
Sbjct: 591 V 591
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 45.2 bits (102), Expect = 6e-05
Identities = 31/96 (32%), Positives = 47/96 (48%)
Frame = -1
Query: 651 KCLASAIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASD 472
K A+ V T +G A LLS+ RP CPI A T R+++L G++P + SD
Sbjct: 481 KLEVDAVFVYTNTGHMASLLSRCRPDCPIFAFTTSTSVRRRLNLQWGLIPF---RLSFSD 537
Query: 471 WLKDVDNRVQSGLRFGRQRGFVHPGDNAVVVTGWKQ 364
++ NR S L + RG + GD + ++ Q
Sbjct: 538 DMESNLNRTFSLL---KARGMIQSGDLVIALSDMLQ 570
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/94 (29%), Positives = 45/94 (47%)
Frame = -1
Query: 645 LASAIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWL 466
L ++IVV T +G A LLS YRP I A T + +++ LY+GV P+ ++
Sbjct: 503 LGTSIVVFTRTGFMAILLSHYRPSGTIFAFTDQERVRQRLALYQGVCPV------QMEFS 556
Query: 465 KDVDNRVQSGLRFGRQRGFVHPGDNAVVVTGWKQ 364
D + L + + G V G+ +V +Q
Sbjct: 557 DDAEKTFGDALSYLLKHGMVKEGEEVALVQSGRQ 590
>11_01_0296 -
2222329-2222481,2222777-2222836,2222965-2223064,
2223152-2223219,2223369-2223464,2223603-2223691,
2223762-2223906,2224100-2224189,2224271-2224342,
2224543-2224623,2224766-2224897,2225026-2225103,
2225280-2225435,2225521-2225618,2225712-2225793
Length = 499
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Frame = -1
Query: 651 KCLASAIVVITTSGKSAHLLSKYRPRCPIIAVT---------RHPQT----ARQVHLYRG 511
K AS I+ T+SG++A L++KYRP P+++V R T ARQ + RG
Sbjct: 379 KVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLRWSFTGAFEARQSLIVRG 438
Query: 510 VLPIVYQEPTASDWLKDVDNRV-QSGLRFGRQRGFVHPGDNAVVVTGWKQGSGFTNTVRV 334
+ P++ ++ + V + L G+ G + D VV Q G ++ V++
Sbjct: 439 LFPMLADPRHPAESTSATNESVLKVALDHGKASGVIKSHDRVVVC----QKVGDSSVVKI 494
Query: 333 IQLE 322
I+L+
Sbjct: 495 IELD 498
>12_01_0297 -
2244793-2244945,2245337-2245396,2245529-2245628,
2245712-2245779,2245922-2246017,2246156-2246244,
2246320-2246464,2246643-2246732,2246816-2246887,
2247052-2247132,2247361-2247492,2247613-2247690,
2247930-2248085,2248227-2248324,2248418-2248499
Length = 499
Score = 40.3 bits (90), Expect = 0.002
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Frame = -1
Query: 651 KCLASAIVVITTSGKSAHLLSKYRPRCPIIAVT---------RHPQT----ARQVHLYRG 511
K AS I+ T+SG++A L++KYRP P+++V R T ARQ + RG
Sbjct: 379 KVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLRWSFTGAFEARQSLIVRG 438
Query: 510 VLPIVYQEPTASDWLKDVDNRV-QSGLRFGRQRGFVHPGDNAVVVTGWKQGSGFTNTVRV 334
+ P++ ++ + V + L G+ G + D VV Q G ++ V++
Sbjct: 439 LFPMLADPRHPAESTNATNESVLKVALDHGKVSGVIKSHDRVVVC----QKVGDSSVVKI 494
Query: 333 IQLE 322
I+L+
Sbjct: 495 IELD 498
>03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328
Length = 448
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -1
Query: 735 LFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRCPIIAV 556
+F L SE P+ P A AS I+V+T G +A L++KYRP P++ V
Sbjct: 348 IFKKLSSEAPVPLSPLESLASSAVQTANISKASLILVLTRGGTTARLIAKYRPAMPVLFV 407
>01_01_1205 -
9693702-9694517,9694591-9695076,9697014-9697095,
9697876-9698051,9698326-9698580
Length = 604
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -1
Query: 744 HRQLFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRCPI 565
H +F + + P+ P A A+ I+V+T G +A L++KYRP PI
Sbjct: 454 HAAVFKSITASAPIPMSPLESLASSAVRTANSAKAALILVLTRGGTTARLVAKYRPSMPI 513
Query: 564 IAV 556
++V
Sbjct: 514 LSV 516
>05_03_0095 - 8349971-8350171,8350659-8351303
Length = 281
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 648 CLASAI-VVITTSGKSAHLLSKYRPRCPIIAVT 553
C+ +A+ +++ G +A L YRP+ P IAVT
Sbjct: 29 CVVAALFILLAAGGAAAALFLLYRPQAPAIAVT 61
>07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134
Length = 401
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 529 LPGGLRVPGDGDDGAARPVLA 591
LPGG R GDG A P+LA
Sbjct: 230 LPGGYRSAGDGGSAAGTPLLA 250
>06_03_1435 - 30142679-30143013,30143101-30143266
Length = 166
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 553 GDGDDGAARPVLAEQVRRLAARRDDHDGRR 642
G G +GA RP + +RR A R +GRR
Sbjct: 135 GGGGEGARRPAASPCIRRPPAARGGANGRR 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,520
Number of Sequences: 37544
Number of extensions: 304713
Number of successful extensions: 890
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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