Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e17r
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54600| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 6e-21
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_44566| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_30991| Best HMM Match : DUF11 (HMM E-Value=2.9) 29 5.3
SB_48360| Best HMM Match : EGF (HMM E-Value=0.1) 28 7.0
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 7.0
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 28 9.3
>SB_54600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 98.3 bits (234), Expect = 6e-21
Identities = 41/95 (43%), Positives = 65/95 (68%)
Frame = -1
Query: 609 KSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLR 430
++A +++++RPRCPI+ VTR P+ ARQ+HL+RG PIVY + + L++ D R+ L
Sbjct: 10 RTAAVVARFRPRCPIVVVTRDPRVARQMHLWRGCFPIVYDQEPLDNVLEEHDQRLDFALG 69
Query: 429 FGRQRGFVHPGDNAVVVTGWKQGSGFTNTVRVIQL 325
G++ GF+ G V V+GWK G+ TNT+R++ L
Sbjct: 70 MGKKMGFLTIGSTFVFVSGWKSGAAHTNTLRILTL 104
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 506 STPR*RCTCLAVCGCLVTAMMGQRGRYLLSRCADLPLVVMTTMA 637
STP T LA GCL+TA+ R R+++S D + V + MA
Sbjct: 237 STPMMLVTELAPLGCLLTALRNNRQRFMVSTLCDFMIQVASGMA 280
>SB_44566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = -1
Query: 498 VYQEPTASDWLKDVDNRVQSGLRFGRQRGFVH--PGDNAVVVT 376
V +EP D + D+ + V SGL + QRGF+H G ++VV++
Sbjct: 72 VDKEPLDEDTVLDIAHDVASGLLYTHQRGFIHCYLGSHSVVIS 114
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = +2
Query: 377 VTTTALSPGCTKPRCRPNRS--PLCTRLSTSFS-QSDAVG 487
VTT LSPGCT +C N S P+C +L+ + + +S+A+G
Sbjct: 885 VTTILLSPGCTGCQCDLNGSLNPVCNKLNGNCTCRSNAIG 924
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 510 VLPIVYQEPTAS-DWLKDVDNRVQSGLRFGRQRGFVHPGDNAVVVTGWKQGSGFTNT 343
V+ +VY+ P A D++K ++ R R + ++ GD + W GSG++NT
Sbjct: 173 VVSVVYRPPDADMDFMKMFSEFTRAASRLHRTK-YLILGDFNLPKVEWLDGSGYSNT 228
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 341 TVLVKPEPCFQPVTTTALSPGCTKPRCRPNRSPLCTRLSTS 463
T+ P+P QP +TA +PG T+P + S +STS
Sbjct: 321 TIEATPQPETQPGASTAKAPGSTEPTVSQSASSPKIPMSTS 361
>SB_30991| Best HMM Match : DUF11 (HMM E-Value=2.9)
Length = 707
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -1
Query: 534 RQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQRGFVHPGDNAVVVTGW---KQ 364
R VH+ RG + P+ + D D SG RQ GF+ D+ V W +
Sbjct: 154 RNVHVIRGYDTAADEYPSQFNLFSDEDGTYNSG----RQVGFIRNDDHGSVQYSWFAPPK 209
Query: 363 GSGFTNT 343
G G T +
Sbjct: 210 GEGLTKS 216
>SB_48360| Best HMM Match : EGF (HMM E-Value=0.1)
Length = 594
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 612 GKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEP 484
G H+ +P+C + VTR+ +A+Q ++ G L + + P
Sbjct: 324 GYITHIRPLLKPKCEYVLVTRNGGSAQQARIHDGRLCDIRRRP 366
>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 352
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 362 PCFQPVTTTALSPGCTKPRCRPNRSPLC 445
PC P+T P TK +CR R P+C
Sbjct: 283 PCGAPITA---KPCMTKQKCRRKRDPVC 307
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 359 EPCFQPVTTTALSPGCTKPRCRPNRSPLCTRLSTSFSQSDAVG 487
+P P T T + PRC N++PL +L +S +++ G
Sbjct: 468 QPPVSPGTVTVKPRHRSSPRCVTNKTPLAVQLRSSSTETPHPG 510
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,515
Number of Sequences: 59808
Number of extensions: 360368
Number of successful extensions: 1369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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