Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e17r
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical p... 145 3e-35
Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical pr... 145 3e-35
Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical pr... 145 3e-35
Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical pr... 145 3e-35
Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical pr... 137 7e-33
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 31 0.87
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 29 4.7
>Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical
protein F25H5.3d protein.
Length = 558
Score = 145 bits (352), Expect = 3e-35
Identities = 65/143 (45%), Positives = 92/143 (64%)
Frame = -1
Query: 750 IWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRC 571
++HR+LF++L+ + P D A C ASAI++ITT+G+SA S+Y+P
Sbjct: 416 VYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLITTTGRSAIQCSRYKPAV 475
Query: 570 PIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQRGFVHPGDN 391
PI+ ++R RQ+HLYRGV P+ Y A+DW DVDNR+ + G+ RGF+H GD
Sbjct: 476 PILTISRDVAVCRQLHLYRGVFPVHYPAERAADWPTDVDNRINHAIAIGKDRGFIHKGDF 535
Query: 390 AVVVTGWKQGSGFTNTVRVIQLE 322
VVVTGW+QG+G TNT+R+I E
Sbjct: 536 LVVVTGWRQGAGATNTLRIITAE 558
>Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical
protein F25H5.3c protein.
Length = 531
Score = 145 bits (352), Expect = 3e-35
Identities = 65/143 (45%), Positives = 92/143 (64%)
Frame = -1
Query: 750 IWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRC 571
++HR+LF++L+ + P D A C ASAI++ITT+G+SA S+Y+P
Sbjct: 389 VYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLITTTGRSAIQCSRYKPAV 448
Query: 570 PIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQRGFVHPGDN 391
PI+ ++R RQ+HLYRGV P+ Y A+DW DVDNR+ + G+ RGF+H GD
Sbjct: 449 PILTISRDVAVCRQLHLYRGVFPVHYPAERAADWPTDVDNRINHAIAIGKDRGFIHKGDF 508
Query: 390 AVVVTGWKQGSGFTNTVRVIQLE 322
VVVTGW+QG+G TNT+R+I E
Sbjct: 509 LVVVTGWRQGAGATNTLRIITAE 531
>Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical
protein F25H5.3b protein.
Length = 600
Score = 145 bits (352), Expect = 3e-35
Identities = 65/143 (45%), Positives = 92/143 (64%)
Frame = -1
Query: 750 IWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRC 571
++HR+LF++L+ + P D A C ASAI++ITT+G+SA S+Y+P
Sbjct: 458 VYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLITTTGRSAIQCSRYKPAV 517
Query: 570 PIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQRGFVHPGDN 391
PI+ ++R RQ+HLYRGV P+ Y A+DW DVDNR+ + G+ RGF+H GD
Sbjct: 518 PILTISRDVAVCRQLHLYRGVFPVHYPAERAADWPTDVDNRINHAIAIGKDRGFIHKGDF 577
Query: 390 AVVVTGWKQGSGFTNTVRVIQLE 322
VVVTGW+QG+G TNT+R+I E
Sbjct: 578 LVVVTGWRQGAGATNTLRIITAE 600
>Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical
protein F25H5.3a protein.
Length = 562
Score = 145 bits (352), Expect = 3e-35
Identities = 65/143 (45%), Positives = 92/143 (64%)
Frame = -1
Query: 750 IWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRC 571
++HR+LF++L+ + P D A C ASAI++ITT+G+SA S+Y+P
Sbjct: 420 VYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLITTTGRSAIQCSRYKPAV 479
Query: 570 PIIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQRGFVHPGDN 391
PI+ ++R RQ+HLYRGV P+ Y A+DW DVDNR+ + G+ RGF+H GD
Sbjct: 480 PILTISRDVAVCRQLHLYRGVFPVHYPAERAADWPTDVDNRINHAIAIGKDRGFIHKGDF 539
Query: 390 AVVVTGWKQGSGFTNTVRVIQLE 322
VVVTGW+QG+G TNT+R+I E
Sbjct: 540 LVVVTGWRQGAGATNTLRIITAE 562
>Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical
protein ZK593.1 protein.
Length = 515
Score = 137 bits (332), Expect = 7e-33
Identities = 60/139 (43%), Positives = 88/139 (63%)
Frame = -1
Query: 747 WHRQLFNDLVSEVKPPIDPXXXXXXXXXXXATKCLASAIVVITTSGKSAHLLSKYRPRCP 568
+H + F +L+ K P C A AI++ITT+GK+A L S+YRP P
Sbjct: 374 FHMKHFEELILHTKKPTGMTHTTAIAAVSATITCRAVAIILITTTGKTARLCSRYRPPVP 433
Query: 567 IIAVTRHPQTARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQRGFVHPGDNA 388
II V+R + +RQ+HL+RG+ P+ Y + +W DV+ RVQ G+ G+ RGF+H GD
Sbjct: 434 IITVSRDERISRQLHLHRGIFPVYYPKGRIDEWDVDVEERVQYGVNLGKTRGFIHLGDPL 493
Query: 387 VVVTGWKQGSGFTNTVRVI 331
+V+TGWKQG+GFTNT+R++
Sbjct: 494 IVITGWKQGAGFTNTMRIV 512
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 332 MTRTVLVKPEPCFQPVTTTALSPGCTKPRCRPNRSPLCTRLSTSFSQSDAV 484
+T T P+P P TTT+ + T P R P R ST S + V
Sbjct: 417 ITTTTKTSPKPTTSPSTTTSTTTSTTIPPSTTTRKPANPRRSTIMSATSKV 467
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 332 MTRTVLVKPEPCFQPVTTTALSP----GCTKPRCRPNRSPLCTRLSTS 463
+T T P+P +P TTT SP TK +P SP T +T+
Sbjct: 392 LTTTTTTTPKPSQKPTTTTTKSPVVITTTTKTSPKPTTSPSTTTSTTT 439
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 374 PVTTTALSPGCT-KPRCRPNRSPLCTRLSTSFSQSDAVGSW*TMGSTPR*RCTCLAVC 544
PVTT+ SP T KP +P +P CT T+F + A + ST TC A C
Sbjct: 345 PVTTS--SPATTPKPTAKPTTAPECTCPPTTFPTTRAPNTACPPVSTCPPVVTCPASC 400
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,730,856
Number of Sequences: 27780
Number of extensions: 273281
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -