Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e17f
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   5.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.7  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 557 VSPFFSSTSAEPPPSKSP 504
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 557 VSPFFSSTSAEPPPSKSP 504
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 380 EPCEKFILATFIPVSIIFSSTATLRDAGPIVQII 279
           +P +  +  T++PV  I  S    +D  P++ +I
Sbjct: 468 QPYDSLLWHTWMPVMRICVSAWNPKDCDPLITLI 501


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 19  ALSRRGIQFFTRKGSSRSRKPPVSRNRELTDKYLHYNP 132
           +L R+  Q   R   SRS++ P +   + T +  +Y P
Sbjct: 198 SLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRP 235


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 533 SAEPPPSKSPVLISGPLVS 477
           SA+P PS+SP  I  P+ +
Sbjct: 337 SAQPTPSQSPNQIYQPVTN 355


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 299 GPIVQIIPERRMYEDL 252
           G I+Q+    R YEDL
Sbjct: 612 GQIIQVANSLRQYEDL 627


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,426
Number of Sequences: 336
Number of extensions: 2744
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)