Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e17f
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 101 8e-23
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.0
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 2.7
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 2.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.7
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 4.7
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 25 8.1
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 8.1
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 101 bits (242), Expect = 8e-23
Identities = 54/106 (50%), Positives = 64/106 (60%)
Frame = +1
Query: 268 RLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 447
R + IICTIGP S NV L K+ + GMN+ RMNFSHGS+EYH I N R+A +
Sbjct: 26 RRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASAT----- 80
Query: 448 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDY 585
F LAIALDTKGPEIRTGL GG + + G + TT Y
Sbjct: 81 NPLFPLAIALDTKGPEIRTGLTVGG--TDYPISSGHEMIFTTDDAY 124
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 178 GAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIG 297
G + + ++ L+ + D+D+K +YI+LS T+G
Sbjct: 15 GTLNESSIYKTYQILESLNPKDVDTKENYIKLSNTFSTLG 54
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.6 bits (56), Expect = 2.7
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Frame = +1
Query: 133 LKMVYPTIH-DGEIEAGAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIGPASR 309
LK+ + I+ + ++ G + T A + S ++ +C DS S ++S P ++
Sbjct: 1151 LKVKFKDINVNWDLHDGYDWEATRATISSAIEKLC----DSSSQNDKIS-------PEAK 1199
Query: 310 NVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAIALDTK 486
+ ++++ V R+N +H S ++ + SY +LG S I ++ K
Sbjct: 1200 TLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISYHLRLGKSKSKKIGIEIK 1258
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 2.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = -2
Query: 524 PP--PSKSPVLISGPLVSNAMAKEKGEPSLAL*LFSASRQLRMVSAWYSWEPCEKFILAT 351
PP PS+ P + + P + EPS+ L LR + + +P K L T
Sbjct: 430 PPKHPSRQPTVRATPSTGKQIEPPNDEPSIGNELLPLFESLRFENRKTTSKPKAKKTLVT 489
Query: 350 FIPVSIIFSSTATLRDAGPIVQI--IPER 270
IP +S + D + + IPE+
Sbjct: 490 SIPTKPHQASVEKVYDLNSKINLKNIPEQ 518
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 554 SPFFSSTSAEPPPSKSPVLISGPLVSNAMAKEKGEPSL 441
SP ST+A P K+P + L+S +KEK PS+
Sbjct: 305 SPLHQSTTANHP-EKTPSRAAASLLSILDSKEKNTPSI 341
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 240 RH*LQVFVHPSLRNNLYYWTGIP*CSCAR 326
RH L++ V L N+Y WT +P C +R
Sbjct: 2344 RHFLKLVV---LWKNIYVWTNVPDCDISR 2369
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 554 SPFFSSTSAEPPPSKSP 504
SP FSS+S PPP P
Sbjct: 231 SPIFSSSSTPPPPPPRP 247
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 452 HPSLWPSHWTLKDLRSELDSWKAAAQLK 535
HP+++PS + +E + WK A +K
Sbjct: 83 HPNVYPSGTVCLSILNEEEGWKPAITIK 110
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 142 VYPTIHDGEIEAGAVEKPTVANVGSQLQHMCGLDIDSKSSY 264
V P + + + AG + +V +QLQ + G+ +DS +++
Sbjct: 123 VLPNLQELQFNAGLSDSDSVVIDDTQLQAIDGISLDSVTTF 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,209
Number of Sequences: 5004
Number of extensions: 44423
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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