Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e17f
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908 103 8e-23
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969... 75 4e-14
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223... 73 2e-13
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 65 3e-11
12_01_0297 - 2244793-2244945,2245337-2245396,2245529-2245628,224... 64 8e-11
11_01_0296 - 2222329-2222481,2222777-2222836,2222965-2223064,222... 62 4e-10
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598... 61 6e-10
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 60 1e-09
02_01_0510 + 3703715-3705040 30 1.2
03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328 30 1.6
08_02_1064 - 24033941-24034127,24034432-24034476,24035355-240354... 29 2.1
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 29 2.7
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290... 28 4.8
07_01_0724 + 5529642-5531141 28 4.8
06_03_0589 - 22572914-22573035,22573353-22573412,22573554-22573692 28 6.3
01_07_0244 + 42244623-42244872,42246495-42246604 28 6.3
01_01_0840 - 6557931-6558377 28 6.3
10_08_0012 - 14092640-14093258,14093495-14093517 27 8.3
07_01_0565 + 4188387-4190570 27 8.3
>04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908
Length = 511
Score = 103 bits (248), Expect = 8e-23
Identities = 52/114 (45%), Positives = 78/114 (68%)
Frame = +1
Query: 244 IDSKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREA 423
+++ + + + ++CT+GPASR+V +LEK++ GMNVAR NFSHG+HEYH ET+ N R+A
Sbjct: 13 LENDDARVPKTKLVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYHQETLDNLRQA 72
Query: 424 EKSYSAKLGSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDY 585
+ + A+ LDTKGPEIRTG L+ G ++L KG+ +LT ++DY
Sbjct: 73 MHN------TGVLCAVMLDTKGPEIRTGFLKDG--KPIKLTKGQ--ELTVTTDY 116
>01_01_1205 -
9693702-9694517,9694591-9695076,9697014-9697095,
9697876-9698051,9698326-9698580
Length = 604
Score = 74.9 bits (176), Expect = 4e-14
Identities = 37/78 (47%), Positives = 51/78 (65%)
Frame = +1
Query: 280 IICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPF 459
I+CT+GPASR+V ++ +++ GM VAR NFSHGSHEYH ET+ N R A +S +
Sbjct: 23 IVCTLGPASRSVEMIGRLLRAGMCVARFNFSHGSHEYHQETLDNLRAAMES------TGI 76
Query: 460 SLAIALDTKGPEIRTGLL 513
A+ LDTK + G+L
Sbjct: 77 LCAVMLDTKARDFVLGVL 94
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 475 LDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDY 585
L +GPEIRTG L+ G V+LKKG+ ++T S+DY
Sbjct: 176 LKIQGPEIRTGFLKDG--KPVQLKKGQ--EITVSTDY 208
>10_08_0999 +
22121029-22121235,22121819-22122082,22122123-22122324,
22122456-22122590,22122668-22122778,22122871-22122959,
22123237-22123299,22123461-22123636,22123785-22123887,
22124286-22124461,22124625-22124733,22124851-22124943,
22126294-22126435,22126655-22126671
Length = 628
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 18/124 (14%)
Frame = +1
Query: 268 RLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 447
R + I+CTIGP++ ++ K+ ETGMNVARMN SHG H+ H + I + K Y+AK
Sbjct: 89 RKTKIVCTIGPSTNTREMIWKLAETGMNVARMNMSHGDHQSHQKVI----DLVKEYNAKN 144
Query: 448 GSPFSLAIALDTK------------GPEIRTG------LLEGGGSAEVELKKGETIKLTT 573
+AI LDTK GPE+R+G +LE G +K+G + K T
Sbjct: 145 TDGNVIAIMLDTKQMSCDDRTSVMQGPEVRSGDVPEPIMLEEGQEFNFTIKRGVSTKDTV 204
Query: 574 SSDY 585
S +Y
Sbjct: 205 SVNY 208
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/91 (37%), Positives = 50/91 (54%)
Frame = +1
Query: 268 RLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 447
R + ++CT+GPA+ LE + GMNVAR+N HG E+H IR R +
Sbjct: 99 RRTKLVCTVGPATCGADELEALAVGGMNVARVNMCHGDREWHRGVIRAVRRLNEE----- 153
Query: 448 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVE 540
F++A+ +DT+G EI G L G +A+ E
Sbjct: 154 -KGFAVAVMMDTEGSEIHMGDLGGAAAAKAE 183
>12_01_0297 -
2244793-2244945,2245337-2245396,2245529-2245628,
2245712-2245779,2245922-2246017,2246156-2246244,
2246320-2246464,2246643-2246732,2246816-2246887,
2247052-2247132,2247361-2247492,2247613-2247690,
2247930-2248085,2248227-2248324,2248418-2248499
Length = 499
Score = 64.1 bits (149), Expect = 8e-11
Identities = 38/100 (38%), Positives = 59/100 (59%)
Frame = +1
Query: 271 LSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLG 450
++ I+ T+GP SR+V + ++ GM+VAR +FS G EYH ET+ N + A KS + KL
Sbjct: 1 MTKIVGTLGPKSRSVDTISSCLKAGMSVARFDFSWGDAEYHQETLENLKVAIKS-TKKL- 58
Query: 451 SPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLT 570
A+ LDT GPE++ + A + L++ T+ LT
Sbjct: 59 ----CAVMLDTVGPELQ---VVNKSEASISLEENGTVILT 91
>11_01_0296 -
2222329-2222481,2222777-2222836,2222965-2223064,
2223152-2223219,2223369-2223464,2223603-2223691,
2223762-2223906,2224100-2224189,2224271-2224342,
2224543-2224623,2224766-2224897,2225026-2225103,
2225280-2225435,2225521-2225618,2225712-2225793
Length = 499
Score = 61.7 bits (143), Expect = 4e-10
Identities = 38/100 (38%), Positives = 57/100 (57%)
Frame = +1
Query: 271 LSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLG 450
++ I+ T+GP SR V + ++ GM+VAR +FS G EYH ET+ N + A KS + KL
Sbjct: 1 MTKIVGTLGPKSRAVDTISSCLKAGMSVARFDFSWGDAEYHQETLENLKLAIKS-TKKL- 58
Query: 451 SPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLT 570
A+ LDT GPE++ + A + L+ T+ LT
Sbjct: 59 ----CAVMLDTVGPELQ---VVNKSEAAISLEANGTVVLT 91
>11_01_0724 +
5981680-5981748,5982301-5982397,5982496-5982593,
5983535-5983690,5983986-5984063,5984135-5984266,
5984856-5984936,5985442-5985510,5985597-5985686,
5986001-5986145,5986218-5986276,5986384-5986479,
5986561-5986628,5986704-5986803,5986910-5986966,
5987179-5987337
Length = 517
Score = 61.3 bits (142), Expect = 6e-10
Identities = 38/100 (38%), Positives = 57/100 (57%)
Frame = +1
Query: 271 LSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLG 450
L+ I+ T+GP S +V V+++ + GM VAR +FS YH ET+ N R+A ++ + KL
Sbjct: 29 LTKIVGTLGPNSHSVEVIQECLTAGMAVARFDFSWMDASYHQETLNNLRKAAQNVN-KL- 86
Query: 451 SPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLT 570
+ LDT GPEI+ GG +ELK G + +T
Sbjct: 87 ----CPVMLDTLGPEIQVHNSTGG---PIELKAGNHVTIT 119
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/79 (41%), Positives = 47/79 (59%)
Frame = +1
Query: 250 SKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEK 429
SK + R + I+CTIGP++ ++ K+ E GMNVAR+N SHG H H + I + K
Sbjct: 108 SKPNVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVI----DLVK 163
Query: 430 SYSAKLGSPFSLAIALDTK 486
Y+A+ +AI LDTK
Sbjct: 164 EYNAQTKDNV-IAIMLDTK 181
>02_01_0510 + 3703715-3705040
Length = 441
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 452 HPSLWPSHWTLKD 490
HP LWP HW +KD
Sbjct: 192 HPFLWPDHWPVKD 204
>03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328
Length = 448
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 487 GPEIRTGLLEGGGSAEVELKKGETIKLT 570
GPEIRTG L+ G ++LK+G+ I +T
Sbjct: 71 GPEIRTGFLKDG--KPIQLKQGKEITIT 96
>08_02_1064 -
24033941-24034127,24034432-24034476,24035355-24035421,
24035521-24035600,24035691-24035769,24035864-24035939
Length = 177
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 343 GMNVARMNFSHGSHEY--HAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGLLE 516
G NV N +Y +AE IR R E+ ++ SP+ L L G E+ T +
Sbjct: 79 GRNVDGRNIMVQFAKYGPNAEPIRKGRIIEEVEKSRDSSPWDLWYLLFQSGTEMTTEIEN 138
Query: 517 GGGSAEVELKKGETI 561
G E +KG +
Sbjct: 139 AGAEVAAEAEKGMAV 153
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 524 PPPSKSPVLISGPLVSNAMAKEKGEPSL 441
PPP+ SP L S P+ S +++EK +L
Sbjct: 335 PPPNPSPSLASAPVYSPVLSREKVRDAL 362
>12_02_1084 -
25928373-25928426,25928551-25928652,25928913-25929039,
25929292-25930730,25931430-25931447
Length = 579
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 253 KSSYIRLSGIICTIGPASRNVAVLEK 330
K + IRL+ IIC P + VAVL+K
Sbjct: 481 KRNEIRLTNIICQFNPLVQQVAVLKK 506
>07_01_0724 + 5529642-5531141
Length = 499
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 321 AREDDGDGNERGKDELLARFP*VPRRDHSQLSRGREELQ 437
AR+DDGDG+ RG+D A + + +R E+Q
Sbjct: 434 ARDDDGDGSFRGEDVAAAVRRVMAEEEGKVFARNAREMQ 472
>06_03_0589 - 22572914-22573035,22573353-22573412,22573554-22573692
Length = 106
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -2
Query: 554 SPFFSSTSAEPPPSKSPVLISGPLVSNAMAKEKGEPSLAL*LFSASRQLRMVS 396
SP + S+ PPS +PV + G + A A + E S A+ + S++ RM S
Sbjct: 8 SPIPVAYSSGDPPSATPVPVPGSDLPAAPAAKSQEASPAVPVIDPSKEERMGS 60
>01_07_0244 + 42244623-42244872,42246495-42246604
Length = 119
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 139 MVYPTIHDGEIEAGAVEKPTVANVGSQLQHMCGL 240
M YP ++ A AV PT A SQL + GL
Sbjct: 32 MQYPQMYQYAAAAAAVGAPTAATTASQLTAVAGL 65
>01_01_0840 - 6557931-6558377
Length = 148
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 336 GDGNERGKDELLARFP*VPRRDHSQLSR 419
GDG RG+D L R+P + RR S +R
Sbjct: 120 GDGKRRGRDGGLRRWPGMTRRRRSSSAR 147
>10_08_0012 - 14092640-14093258,14093495-14093517
Length = 213
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 307 RNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAE 426
R+ ++LE + G ++ +F+ G H +H E N +A+
Sbjct: 18 RDYSLLEAITPNGKSIKSTSFAVGGHSWHVEYYPNGYDAD 57
>07_01_0565 + 4188387-4190570
Length = 727
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +1
Query: 121 HYNPLKMVYPTIHDGEIEAGAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIGP 300
H +P M Y T+ G AG VEK + +++ GL +D + G + T G
Sbjct: 330 HVDPDTMAYTTMIAGLCNAGMVEK--AEELFGEMRRK-GLLVDRMVYASLIDGYVST-GR 385
Query: 301 ASRNVAVLEKMMETG 345
S VL++M++ G
Sbjct: 386 VSDGCRVLKEMVDAG 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,370
Number of Sequences: 37544
Number of extensions: 328947
Number of successful extensions: 962
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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