Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e17f
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)                     75   4e-14
SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)                30   1.6  
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)                      29   3.7  
SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)                     28   4.9  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)                       28   4.9  
SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  

>SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)
          Length = 211

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)
 Frame = +1

Query: 214 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHE 387
           S L+    LDID     IR SG++CTIGPASR+V ++ +++E GMN+AR+NFSHG+HE
Sbjct: 28  SNLEFRSELDIDKHPLTIRNSGVVCTIGPASRSVEIVAQLIENGMNIARLNFSHGTHE 85


>SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)
          Length = 306

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +1

Query: 46  FTRKGSSRSRKPPVSRNRE-LTDKYLHYNPLKMVYPTIHDGEIEAGAVEKPTVANVGSQL 222
           FT+  + +  +P    N E L +K + YN L    P +  G       +K  ++ VGS+ 
Sbjct: 68  FTKVETLKRSQPTKDVNTESLVNKLMGYNQLNKSLPALRHGNTYEPVAKKKYISTVGSKH 127

Query: 223 Q----HMCGLDIDSKSSYIRLS 276
           Q       GL +D +  Y+  S
Sbjct: 128 QIFNHREGGLFVDPERPYLGAS 149


>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +1

Query: 307 RNVAVLEKMMETG--MNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI-AL 477
           RN A LE+    G  + +AR NF     E  A+T + C E   + ++++       + AL
Sbjct: 155 RNEAALEREQAVGDALAIARKNFERRRKEVIAQTRQQCEEEAATEASRVARLHQQEVGAL 214

Query: 478 DTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDY 585
           D +  +++  L     S     KK   + L    DY
Sbjct: 215 DQRIDDLKNML----ASERAAAKKLAGVHLALKEDY 246


>SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)
          Length = 317

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 530 AEPPPSKSPVLISGPLVSNAMAKEKGEP 447
           A PPPS+SPV  +G  +S+A   +K +P
Sbjct: 17  ALPPPSESPVWRTGNALSSAKKDKKRQP 44


>SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)
          Length = 289

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 385 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 498
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 4   ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 41


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 385 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 498
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 287 ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 324


>SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)
          Length = 125

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 385 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 498
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 84  ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 121


>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 385 EYHAETIRNCREAEKSYSAKLGS 453
           E+H E IR  +EA KSY  K GS
Sbjct: 119 EHHEEAIRRHKEALKSYEKKDGS 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,876
Number of Sequences: 59808
Number of extensions: 368796
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)