Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e17f
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 314 TLRDAGPIVQIIPERRMYEDLESMSRPHICWSWEPT 207
           +++ A  IV I PER    D E       CWS EP+
Sbjct: 809 SVKKALMIVGIRPERLPSFDDECWRLMEQCWSGEPS 844


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 314 TLRDAGPIVQIIPERRMYEDLESMSRPHICWSWEPT 207
           +++ A  IV I PER    D E       CWS EP+
Sbjct: 847 SVKKALMIVGIRPERLPSFDDECWRLMEQCWSGEPS 882


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 154 IHDGEIEAGAVEKPTVANVGSQLQHMCGLDI 246
           +  GE+  G + K T+      L H+C L++
Sbjct: 91  VEHGELVMGILCKKTLGTSAGSLLHICMLEL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,076
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)