Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e15r
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy...    36   0.005
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    29   0.96 
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    28   1.3  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   2.9  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   6.8  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             26   6.8  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   9.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.0  

>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 152

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = -2

Query: 108 QAISSMLLSWYMSGYYTGLYQGMKRSKE 25
           +    +++SWY +GYYTGL +G+ +S++
Sbjct: 122 ETYKKLIMSWYYAGYYTGLAEGLAKSEQ 149



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -2

Query: 765 EEDVWDDKKLNDAYDKAL----KMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKE 598
           +++VWDD +L +A++ AL    K  + E    V+   +   G K     ++  + S  +E
Sbjct: 5   QKEVWDDSELRNAFETALHEFKKYHSIEAKGGVSDPDSRLDGEKLISAARTEESISKLEE 64

Query: 597 TEWKAGMPCRAVYEGD 550
            E           EGD
Sbjct: 65  GEQMINQQTETTLEGD 80


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 613 RRRAGFAFEFTFVTMLCISRHCYSLCDFSVCH 708
           R R+ F F F +   + +   CY +C + VC+
Sbjct: 552 RSRSAFEFSFVYDNEIVLFDTCYMVCTYIVCN 583


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 196 SVEKPGRDGDAHPSSAPDELHKRQHGLGTASDLLDAPELVHER 68
           ++E   + G+A+    P +L+      GT  DL+D  + +H+R
Sbjct: 90  NIEGRTKYGEAYHGYWPQDLYTLNPHFGTEQDLIDLADALHDR 132


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
 Frame = -2

Query: 726 YDKALKMANAEVAKRVAMSTNTE----HGNKGKLKGKSRPTSSNKKETEWKAGMPCRAVY 559
           YDKALK AN  +  R+  +T  E       K KL G   P ++ K+E +       ++V 
Sbjct: 24  YDKALKFANKSL--RIHATTEGEDFVKQIEKQKLTGSPNPQATPKQENKSNFFSEKQSVR 81

Query: 558 EGDGLEYEAFILRVISDTECVV-RFLGYENSELVPLNALKPSLGNEERTRQIEE-ALQDN 385
           E           +  S+   +V + + Y+N +   +  LK +  + E  +  ++ ALQ +
Sbjct: 82  ENGNSSAGEKKQKWTSEQHLLVQKIIKYKNHQYYEILDLKKTCTDTEIKKSYKKLALQLH 141

Query: 384 GDDGFGSQSPDLDRM 340
            D      + +  +M
Sbjct: 142 PDKNHAPSADEAFKM 156


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 297 LYSLDCVHPCHFQTAFDQDPETDFQSHRHHYPA 395
           LY+ + VHP    T    D  T  +S  +HYPA
Sbjct: 493 LYTTEPVHPHAVTTNEPTDVSTKSKSAAYHYPA 525


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 405 LFDGSSPHFPDLVLARLMALTLNFHNLKISQH 500
           LF GS  HF + VL +L ++T N H L+I Q+
Sbjct: 324 LFVGS--HFNNSVLLQLPSITKNNHKLEILQN 353


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 187 KPGRDGDAHPSSAPDELHKRQHGL 116
           KPG++GD    S P E H+ +  L
Sbjct: 567 KPGQEGDVFKKSKPIEQHRNREEL 590


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 744 KKLNDAYDKALKMANAEVAKRVAMSTNT 661
           +++ +  +K LK ANA++A ++  STNT
Sbjct: 234 ERVGEEIEKMLKGANAKLALQLLYSTNT 261


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 426 EERTRQIEEALQDNGDDGFGSQSPDLDRMQ 337
           EE+  Q E+ +QD G  GF +   + +++Q
Sbjct: 109 EEKLLQTEDEIQDEGYSGFENYVEESEKLQ 138


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 675 MSTNTEHGNKGKLKGKSRPTSSNKKE 598
           M  N   GN+G   G+S+  +++KK+
Sbjct: 407 MKRNFRKGNRGAFDGRSKEVTTSKKQ 432


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 720 KALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKET 595
           K  K  ++EV   +  S N E   KGK K    P   NK+ET
Sbjct: 4   KGKKGKSSEV--NLETSKNKEKNIKGKKKNSLDPIEKNKQET 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,009
Number of Sequences: 5004
Number of extensions: 59875
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)