Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e15r
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 1.0
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 31 1.0
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 30 2.3
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 29 3.1
01_04_0013 + 15081879-15082370,15093535-15094050 29 3.1
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 29 5.4
05_01_0567 - 4967373-4967675,4968023-4968083,4968217-4968284,496... 29 5.4
03_06_0721 - 35742380-35742736,35743206-35743398,35743497-357435... 29 5.4
01_06_0938 - 33179237-33179362,33179485-33179668,33180114-331804... 29 5.4
06_03_1332 - 29403320-29407804 28 9.4
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 172 GDAHPSSAPDELHKRQHGLGTASDLLDAPELVHERLLHRPLPG 44
G+A S+A E G G A+ LL P+L + HRP PG
Sbjct: 165 GEAAASAAKQEAKGNGDGDGEAAPLLRRPQLRSDYSTHRPPPG 207
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -2
Query: 528 ILRVISDTECVVRFLGYENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGSQSPD 352
I R TE V+ L Y + L L + ER+R +++ D G GSQ+ D
Sbjct: 1807 IARAYHATETYVQALSYAKNLLKKLVGTSDLSSSSERSRDVDDISVDTGSSSAGSQNID 1865
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 154 RRDGHLHPAQVSQRCHV--RHR-YFW*FKSNVPTFFHGFLLLRWFSWSRSICTLWTVYTP 324
RRDG+ H + + + HR Y F +P G + LR R++ +T+ +P
Sbjct: 329 RRDGYCHRTEPGSKYSIVQTHRIYHQYFPRTLPAMMWGMVALRQHKGQRTVDVRFTLNSP 388
Query: 325 VTSKLHSIKIRR 360
V K+R+
Sbjct: 389 VPVFFDKDKVRQ 400
>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 271 RWFSWSRSICTLWTVYTPVTSKLHSIKIRRLTSKAIVTIILQRFF 405
RW+SW+ + WT+Y V S+ I L +V ++R+F
Sbjct: 1365 RWYSWACPVA--WTLYGLVASQYGDITNSTLEDGEVVQDYIRRYF 1407
>01_04_0013 + 15081879-15082370,15093535-15094050
Length = 335
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -2
Query: 675 MSTNTEHGNKGKLKGKSRPTSSNKKETEWKAGMPCRAVYEGDGLEYEA-FILRVISDTEC 499
M TN G+KG + PT+ +KK+ +A A +G G + + ++ + +S T
Sbjct: 1 MGTNGAQGSKGASSTTTNPTNDDKKKKPAQA-PGADADADGGGKKNNSDYVDKTLSTTAN 59
Query: 498 VVRFLGYENSELVPLNALKPSLGNEER 418
+V+ L + AL PS N R
Sbjct: 60 LVKLL--PTGTTLAFQALAPSFTNHGR 84
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 756 VWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKET 595
V D YD + A+ EVAK N N L G P++S K++
Sbjct: 116 VLSDHAKRSLYDTERQRASREVAKEATQPPNKTEANINNLAGSMPPSASVLKQS 169
>05_01_0567 -
4967373-4967675,4968023-4968083,4968217-4968284,
4968390-4968425,4968553-4968726,4968983-4969023,
4969138-4969187,4969300-4969388,4969490-4969564,
4969684-4969772,4971320-4971434
Length = 366
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 735 NDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKK 601
+D KALK A V K+ A +++++HG+ G + P S + K
Sbjct: 277 DDQTSKALKNWRAGVKKKPAAASSSKHGDAGGDHAAASPHSGSPK 321
>03_06_0721 -
35742380-35742736,35743206-35743398,35743497-35743552,
35745951-35746727
Length = 460
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 345 DQDPET-DFQSHRHHYPAALLL-FDGSSPHFPD 437
D DPE D + H HH PAA L D + P D
Sbjct: 175 DDDPEPRDAEQHHHHQPAAAALDLDPAEPRGAD 207
>01_06_0938 -
33179237-33179362,33179485-33179668,33180114-33180409,
33180702-33180821,33180931-33181018,33181352-33181426,
33181565-33181632,33181770-33181852,33182010-33182058,
33183006-33183126,33183225-33183310,33183782-33183910,
33184033-33184155,33184277-33184486,33185217-33185240
Length = 593
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 303 SLDCVHPCHFQTAFDQDPETDFQSHRHHYPAALLL--FDGSSPH 428
S+ VHP ++ D D + DF R ++ AAL FDG H
Sbjct: 456 SMSTVHPESSSSSDDTDDDDDFAEERKNFGAALSFRHFDGLLVH 499
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 621 PTSSNKKETEWKAGMPCRAVYEGDGLEYE 535
P S+ W+ G PCRA+ EG GL+++
Sbjct: 1019 PKLSSFPPIPWR-GSPCRALIEGVGLDFQ 1046
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,727
Number of Sequences: 37544
Number of extensions: 391603
Number of successful extensions: 1096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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