Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e15r
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein pro... 44 1e-04
AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival moto... 44 1e-04
Z83122-3|CAB05596.1| 113|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical pr... 28 6.3
U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein ... 28 6.3
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 28 8.4
>Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical
protein C41G7.1b protein.
Length = 207
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -2
Query: 117 SEQQAISSMLLSWYMSGYYTGLYQGMKRSK 28
++++A++SML+SWYMSGY+TG YQ + K
Sbjct: 174 NQKEAMNSMLMSWYMSGYHTGYYQALADQK 203
Score = 35.5 bits (78), Expect = 0.042
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -2
Query: 762 EDVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKA 583
+DVWDD +L YD++L+ E++K + T K KG+ + K WK
Sbjct: 14 DDVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKV 59
Query: 582 GMPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 445
G C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 60 GGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109
>Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical
protein C41G7.1a protein.
Length = 197
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -2
Query: 117 SEQQAISSMLLSWYMSGYYTGLYQGMKRSK 28
++++A++SML+SWYMSGY+TG YQ + K
Sbjct: 164 NQKEAMNSMLMSWYMSGYHTGYYQALADQK 193
Score = 35.5 bits (78), Expect = 0.042
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -2
Query: 762 EDVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKA 583
+DVWDD +L YD++L+ E++K + T K KG+ + K WK
Sbjct: 4 DDVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKV 49
Query: 582 GMPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 445
G C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 50 GGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99
>Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein
protein.
Length = 197
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -2
Query: 117 SEQQAISSMLLSWYMSGYYTGLYQGMKRSK 28
++++A++SML+SWYMSGY+TG YQ + K
Sbjct: 164 NQKEAMNSMLMSWYMSGYHTGYYQALADQK 193
Score = 35.5 bits (78), Expect = 0.042
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -2
Query: 762 EDVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKA 583
+DVWDD +L YD++L+ E++K + T K KG+ + K WK
Sbjct: 4 DDVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKV 49
Query: 582 GMPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 445
G C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 50 GGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99
>AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival motor
neuron protein protein.
Length = 207
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -2
Query: 117 SEQQAISSMLLSWYMSGYYTGLYQGMKRSK 28
++++A++SML+SWYMSGY+TG YQ + K
Sbjct: 174 NQKEAMNSMLMSWYMSGYHTGYYQALADQK 203
Score = 35.5 bits (78), Expect = 0.042
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -2
Query: 762 EDVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKA 583
+DVWDD +L YD++L+ E++K + T K KG+ + K WK
Sbjct: 14 DDVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKV 59
Query: 582 GMPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 445
G C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 60 GGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109
>Z83122-3|CAB05596.1| 113|Caenorhabditis elegans Hypothetical
protein R11A5.6 protein.
Length = 113
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 384 GDDGFGSQSPDLDRMQFGSDRGVHSPESTD 295
G+DG G + P +D +F +G H P+ +
Sbjct: 57 GEDGEGCKQPRVDIKKFRKKKGAHKPQEPE 86
>Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical
protein R10H10.2 protein.
Length = 570
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 221 QKYRCLTWQ-R*ETWAGWRCPSLLRPR 144
Q+ RC TW+ ETW RC +++ PR
Sbjct: 302 QRTRCETWKLSTETWQWDRCNNMMEPR 328
>U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein
protein.
Length = 570
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 221 QKYRCLTWQ-R*ETWAGWRCPSLLRPR 144
Q+ RC TW+ ETW RC +++ PR
Sbjct: 302 QRTRCETWKLSTETWQWDRCNNMMEPR 328
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 765 EEDVW-DDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKE 598
EE W D+++ +K LKM E KR E K K KS+ NKK+
Sbjct: 301 EEKKWADERRKLRKIEKDLKMRKRETMKRAEKMKEAEL-KKKKESSKSKEEDKNKKK 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,549,808
Number of Sequences: 27780
Number of extensions: 335687
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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