Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e15f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    29   0.74 
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   2.3  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy...    26   3.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   3.9  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   5.2  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             26   5.2  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.9  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   6.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   6.9  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.1  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 302 RRRAGFAFEFTFVTMLCISRHCYSLCDFSVCH 207
           R R+ F F F +   + +   CY +C + VC+
Sbjct: 552 RSRSAFEFSFVYDNEIVLFDTCYMVCTYIVCN 583


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
 Frame = +3

Query: 189 YDKALKMANAEVAKRVAMSTNTE----HGNKGKLKGKSRPTSSNKKETEWKAGMPCRAVY 356
           YDKALK AN  +  R+  +T  E       K KL G   P ++ K+E +       ++V 
Sbjct: 24  YDKALKFANKSL--RIHATTEGEDFVKQIEKQKLTGSPNPQATPKQENKSNFFSEKQSVR 81

Query: 357 EGDGLEYEAFILRVISDTECVV-RFLGYENSELVPLNALKPSLGNEERTRQIEE-ALQDN 530
           E           +  S+   +V + + Y+N +   +  LK +  + E  +  ++ ALQ +
Sbjct: 82  ENGNSSAGEKKQKWTSEQHLLVQKIIKYKNHQYYEILDLKKTCTDTEIKKSYKKLALQLH 141

Query: 531 GDDGFGSQSPDLDRM 575
            D      + +  +M
Sbjct: 142 PDKNHAPSADEAFKM 156


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 618 LYSLDCVHPCHFQTAFDQDPETDFQSHRHHYPA 520
           LY+ + VHP    T    D  T  +S  +HYPA
Sbjct: 493 LYTTEPVHPHAVTTNEPTDVSTKSKSAAYHYPA 525


>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 152

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +3

Query: 156 DVWDDKKLNDAYDKAL----KMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETE 323
           +VWDD +L +A++ AL    K  + E    V+   +   G K     ++  + S  +E E
Sbjct: 7   EVWDDSELRNAFETALHEFKKYHSIEAKGGVSDPDSRLDGEKLISAARTEESISKLEEGE 66

Query: 324 WKAGMPCRAVYEGD 365
                      EGD
Sbjct: 67  QMINQQTETTLEGD 80


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 510 LFDGSSPHFPDLVLARLMALTLNFHNLKISQH 415
           LF GS  HF + VL +L ++T N H L+I Q+
Sbjct: 324 LFVGS--HFNNSVLLQLPSITKNNHKLEILQN 353


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  NLNTKKYLKEYLIYNPHQNV*KRNF 106
           N   KK   EY IY+ H +  KRNF
Sbjct: 38  NTTMKKLKTEYPIYHRHLSALKRNF 62


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 171 KKLNDAYDKALKMANAEVAKRVAMSTNT 254
           +++ +  +K LK ANA++A ++  STNT
Sbjct: 234 ERVGEEIEKMLKGANAKLALQLLYSTNT 261


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 489 EERTRQIEEALQDNGDDGFGSQSPDLDRMQ 578
           EE+  Q E+ +QD G  GF +   + +++Q
Sbjct: 109 EEKLLQTEDEIQDEGYSGFENYVEESEKLQ 138


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 240 MSTNTEHGNKGKLKGKSRPTSSNKKE 317
           M  N   GN+G   G+S+  +++KK+
Sbjct: 407 MKRNFRKGNRGAFDGRSKEVTTSKKQ 432


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 195 KALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKET 320
           K  K  ++EV   +  S N E   KGK K    P   NK+ET
Sbjct: 4   KGKKGKSSEV--NLETSKNKEKNIKGKKKNSLDPIEKNKQET 43


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 189 YDKALKMANAEVAKRVAMSTN--TEHGNKGKLKGKSRPTSSNKKETEW 326
           Y K     + + +KRV  S       GN+ K    S P S  KK+T+W
Sbjct: 375 YPKESPTPSKKRSKRVLWSLKHIVSPGNREKHSLNSTPESIMKKDTKW 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,337
Number of Sequences: 5004
Number of extensions: 41023
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)