Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e15f
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 31 0.76
01_04_0013 + 15081879-15082370,15093535-15094050 29 2.3
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 29 4.1
05_01_0567 - 4967373-4967675,4968023-4968083,4968217-4968284,496... 29 4.1
03_06_0721 - 35742380-35742736,35743206-35743398,35743497-357435... 29 4.1
01_06_0938 - 33179237-33179362,33179485-33179668,33180114-331804... 29 4.1
06_03_1332 - 29403320-29407804 28 7.1
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 9.4
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +3
Query: 387 ILRVISDTECVVRFLGYENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGSQSPD 563
I R TE V+ L Y + L L + ER+R +++ D G GSQ+ D
Sbjct: 1807 IARAYHATETYVQALSYAKNLLKKLVGTSDLSSSSERSRDVDDISVDTGSSSAGSQNID 1865
>01_04_0013 + 15081879-15082370,15093535-15094050
Length = 335
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 240 MSTNTEHGNKGKLKGKSRPTSSNKKETEWKAGMPCRAVYEGDGLEYEA-FILRVISDTEC 416
M TN G+KG + PT+ +KK+ +A A +G G + + ++ + +S T
Sbjct: 1 MGTNGAQGSKGASSTTTNPTNDDKKKKPAQA-PGADADADGGGKKNNSDYVDKTLSTTAN 59
Query: 417 VVRFLGYENSELVPLNALKPSLGNEER 497
+V+ L + AL PS N R
Sbjct: 60 LVKLL--PTGTTLAFQALAPSFTNHGR 84
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 159 VWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKET 320
V D YD + A+ EVAK N N L G P++S K++
Sbjct: 116 VLSDHAKRSLYDTERQRASREVAKEATQPPNKTEANINNLAGSMPPSASVLKQS 169
>05_01_0567 -
4967373-4967675,4968023-4968083,4968217-4968284,
4968390-4968425,4968553-4968726,4968983-4969023,
4969138-4969187,4969300-4969388,4969490-4969564,
4969684-4969772,4971320-4971434
Length = 366
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 180 NDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKK 314
+D KALK A V K+ A +++++HG+ G + P S + K
Sbjct: 277 DDQTSKALKNWRAGVKKKPAAASSSKHGDAGGDHAAASPHSGSPK 321
>03_06_0721 -
35742380-35742736,35743206-35743398,35743497-35743552,
35745951-35746727
Length = 460
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 570 DQDPET-DFQSHRHHYPAALLL-FDGSSPHFPD 478
D DPE D + H HH PAA L D + P D
Sbjct: 175 DDDPEPRDAEQHHHHQPAAAALDLDPAEPRGAD 207
>01_06_0938 -
33179237-33179362,33179485-33179668,33180114-33180409,
33180702-33180821,33180931-33181018,33181352-33181426,
33181565-33181632,33181770-33181852,33182010-33182058,
33183006-33183126,33183225-33183310,33183782-33183910,
33184033-33184155,33184277-33184486,33185217-33185240
Length = 593
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 612 SLDCVHPCHFQTAFDQDPETDFQSHRHHYPAALLL--FDGSSPH 487
S+ VHP ++ D D + DF R ++ AAL FDG H
Sbjct: 456 SMSTVHPESSSSSDDTDDDDDFAEERKNFGAALSFRHFDGLLVH 499
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 294 PTSSNKKETEWKAGMPCRAVYEGDGLEYE 380
P S+ W+ G PCRA+ EG GL+++
Sbjct: 1019 PKLSSFPPIPWR-GSPCRALIEGVGLDFQ 1046
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 207 MANAEVAKRVAMSTNT--EHGNKGKLKGKSRPTSSNKKETEWKAGMPCRAVYEGD 365
+A+ K +A T E K + +GKS T S K+ +E K P + +GD
Sbjct: 117 LADCRAVKNLAERTRKWEEDRRKERREGKSPATPSGKRRSEAKQKAPAVDIDDGD 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,856
Number of Sequences: 37544
Number of extensions: 247847
Number of successful extensions: 694
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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