Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e15f
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10669| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 38 0.007
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 37 0.012
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28) 33 0.19
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 29 0.60
SB_11900| Best HMM Match : SMN (HMM E-Value=6.3e-10) 31 0.78
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 29 2.4
SB_1312| Best HMM Match : TUDOR (HMM E-Value=0.013) 29 3.1
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8) 29 3.1
SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 29 4.1
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3) 28 7.2
SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26) 27 9.6
SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14) 27 9.6
>SB_10669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 WKAGMPCRAVYEGDGLEYEAFILRVISDTE-CVVRF 428
WK G CRA++ DGL YEA I + D + C+V +
Sbjct: 1 WKVGDSCRAIFSEDGLMYEAVITSIDCDAQTCIVMY 36
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +3
Query: 330 AGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKP 476
AG PC A + D Y A I V D VR++ Y NSE +PL+ L P
Sbjct: 1716 AGWPCLAQFTDDDAWYRAEIQEV-KDGGVDVRYMDYGNSEFLPLSRLSP 1763
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 327 KAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVP---LNALKP 476
+ G PC A++ D Y + V + V+F+ Y NSE++P L A++P
Sbjct: 719 RVGTPCCAMFSVDEGWYRGLVTGVTRANQVEVQFVDYGNSEIMPPSQLRAMRP 771
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 333 GMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKP 476
G PC A + D Y A ++ + D VR++ + N+E +P++ L P
Sbjct: 1533 GKPCLAKFTEDNAWYRA-VITAVEDPTFHVRYVDFGNTECLPVDRLAP 1579
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 309 KKETEWKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALK 473
K T + +PC A+Y D Y A I++ I + +V+F Y NS+ + + +K
Sbjct: 1333 KLVTSPRVRLPCVAIYSDDESWYRA-IIQSIQGAKGIVQFSDYGNSQEIQMKDVK 1386
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 333 GMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKPSL 482
G PC A + DG+ Y A + + V ++ + NSELV L+AL+ +
Sbjct: 420 GQPCAAQFADDGMWYRAVVSCFHGNDRVEVNYVDFGNSELVALSALRTDM 469
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 333 GMPCRAVYEGDGLEYEAFILRVISDT--ECVVRFLGYENSELVPLNALKPSLGNEERTRQ 506
GM C Y D + Y A ++ V S VR++ Y N E++P +L L TR+
Sbjct: 714 GMLCCGQYTEDDMWYRAQVISVESGNPLSAHVRYIDYGNDEVLPPASLTKKLHCPYTTRE 773
Query: 507 IEEAL 521
+ L
Sbjct: 774 LRSHL 778
>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
Length = 1282
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 333 GMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALK 473
G C A Y D Y A IL S+ VRF+ Y N E VP++ +K
Sbjct: 95 GQACCAQYSADEQWYRAEILST-SEDGVYVRFVDYGNEETVPVSKVK 140
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 291 RPTSSNKKETEWKAGMPCRAVYEGD 365
+PT SN+K EWK G+PC+ E D
Sbjct: 185 KPTKSNQKAIEWK-GVPCQRCVEQD 208
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 29.5 bits (63), Expect(2) = 0.60
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 540 HRHHYPAA-LLLFDGSSPHFPDLVLARLMALTLNFHN 433
H HH+P LLL SSPH+ + ++ +N H+
Sbjct: 485 HHHHHPTGQLLLTSSSSPHWSIITHIIIITTLVNHHS 521
Score = 20.6 bits (41), Expect(2) = 0.60
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -2
Query: 561 PETDFQSHRHHYP 523
P + SH HH+P
Sbjct: 453 PLVNHHSHHHHHP 465
>SB_11900| Best HMM Match : SMN (HMM E-Value=6.3e-10)
Length = 240
Score = 31.1 bits (67), Expect = 0.78
Identities = 31/127 (24%), Positives = 52/127 (40%)
Frame = +3
Query: 93 KSEILYVRGMNISXXXXXXXXDVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKG 272
+ E++Y G + S D+WDD L +AYD+A+ + E+G G
Sbjct: 6 EGEVIYKAGQSTSVS------DIWDDSALIEAYDRAVNLIK-------------ENGLDG 46
Query: 273 KLKGKSRPTSSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSEL 452
SN+ T+W+ C A G ++A I ++ C V F+ S+
Sbjct: 47 ----------SNQAATQWQVSDLCLAPEHPSGHMHQAVINTFLTAYTCKVTFVRSRRSQE 96
Query: 453 VPLNALK 473
V + L+
Sbjct: 97 VQTSRLQ 103
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 237 AMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 335
A ++ EHG K+KG S+ S++KK T+ KAG
Sbjct: 1301 AEASGKEHGKGSKVKGNSK-RSNSKKGTKSKAG 1332
>SB_1312| Best HMM Match : TUDOR (HMM E-Value=0.013)
Length = 153
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 348 AVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALK 473
A DG+ Y A I V++ + VRFL Y + ++ +AL+
Sbjct: 16 AAKNSDGMYYRAMIKAVLAPNQYCVRFLDYGDFAILQSSALQ 57
>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
Length = 796
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/87 (21%), Positives = 39/87 (44%)
Frame = +3
Query: 372 EYEAFILRVISDTECVVRFLGYENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGS 551
E I R + D C + + Y+N +VP+N+ K ++ + +I + ++ + F
Sbjct: 53 ENNGLIDRWVQDAYCGDKAVDYDNEFVVPMNS-KMNILDNRNVLEISKNTSNSANKSF-E 110
Query: 552 QSPDLDRMQFGSDRGVHSPESTDRSTP 632
S ++ G+ G +S S + P
Sbjct: 111 DSVKTEKDSIGTKHGGNSKNSEESCKP 137
>SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 438 ENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVH-SPES 614
EN L+ K LG+E+ T +EE + + D + QS DR R +P+
Sbjct: 325 ENVALIKEELAKMDLGDEDTTGDVEEVISNADDAQYVEQSYFKDRQNSIDKRDPQGNPDK 384
Query: 615 TDR 623
+D+
Sbjct: 385 SDQ 387
>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 791
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 23 LKENLNTKKYLKEYLIYNPHQN 88
L EN+NTKKYLK++ N + N
Sbjct: 453 LSENVNTKKYLKKHSYGNANTN 474
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 300 SSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKP 476
S+N E + C A Y G Y A + D V ++ + N E +PL +L+P
Sbjct: 1463 STNHVEFTPEVKTVCAAKYSESGEWYRAIVETRNPDRTAGVFYVDFGNRETLPLTSLQP 1521
>SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3)
Length = 532
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 588 HFQTAFDQDPETDFQSHRHHYPAALLLFDGSSPHFPDLVLARL-MALTLNFHNLKISQHI 412
H TA DP H H+ L + +S H P L+ R + + N HN + S ++
Sbjct: 190 HVNTAISSDP-----GHNHYIVHGTKLCENNSQHLPVLITTRHDYSTSANTHNARNSSNL 244
>SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)
Length = 363
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 456 PLNALKPSLGNEERTRQIEEALQDNGDDGFGSQS 557
PL + +PS G + ++E A ++ G DG G S
Sbjct: 286 PLASNQPSSGGVKMDPELENAAKETGYDGLGGHS 319
>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
Length = 1071
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -2
Query: 612 SLDCVHPCHFQTAFDQDPETDFQSHRHHYPAALL 511
++ PCH +TAF+ + +HH A L
Sbjct: 753 TITACEPCHVETAFEHQDSGPKRKRKHHSSAGSL 786
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,184
Number of Sequences: 59808
Number of extensions: 296002
Number of successful extensions: 940
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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