Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e15f
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical pr...    35   0.056
Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical pr...    35   0.056
Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein pro...    35   0.056
AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival moto...    35   0.056
Z83122-3|CAB05596.1|  113|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024206-6|AAF36048.2|  243|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical
           protein C41G7.1b protein.
          Length = 207

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +3

Query: 156 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 335
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 15  DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 60

Query: 336 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 470
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 61  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109


>Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical
           protein C41G7.1a protein.
          Length = 197

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +3

Query: 156 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 335
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 5   DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 50

Query: 336 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 470
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 51  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99


>Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein
           protein.
          Length = 197

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +3

Query: 156 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 335
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 5   DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 50

Query: 336 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 470
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 51  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99


>AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival motor
           neuron protein protein.
          Length = 207

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +3

Query: 156 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 335
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 15  DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 60

Query: 336 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 470
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 61  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109


>Z83122-3|CAB05596.1|  113|Caenorhabditis elegans Hypothetical
           protein R11A5.6 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 531 GDDGFGSQSPDLDRMQFGSDRGVHSPESTD 620
           G+DG G + P +D  +F   +G H P+  +
Sbjct: 57  GEDGEGCKQPRVDIKKFRKKKGAHKPQEPE 86


>AC024206-6|AAF36048.2|  243|Caenorhabditis elegans Hypothetical
           protein Y74C9A.1 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 14  KF*LKENLNTKKYLKEYLIYNPHQN 88
           +F LK   NTKK + EY  YN  QN
Sbjct: 92  RFILKYTSNTKKCVNEYFQYNHGQN 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,179,417
Number of Sequences: 27780
Number of extensions: 225729
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)