Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e15f
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19680.1 68414.m02453 expressed protein                             31   0.48 
At5g51870.1 68418.m06430 MADS-box protein (AGL71) contains Pfam ...    29   1.9  
At4g21860.1 68417.m03161 methionine sulfoxide reductase domain-c...    29   3.4  
At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autopha...    28   5.9  

>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 492 ERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRST 629
           +  R++ + ++D+ +   GS+  D+D++  G +RG  S E+   +T
Sbjct: 33  DNRRRVADEIKDSSNHNVGSRGIDIDKLSLGLERGPPSSETGGLAT 78


>At5g51870.1 68418.m06430 MADS-box protein (AGL71) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 207

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 228 KRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAGMP 341
           KR+    N  H +KG  +G  R   S++ ET+   G+P
Sbjct: 166 KRLLEEVNMHHSSKGNTEGGHRTKHSSEVETDLFIGLP 203


>At4g21860.1 68417.m03161 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 202

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 258 HGNKGKLKGKSRPTSSNKKETEWKA 332
           HG +    G S P S NK E EW+A
Sbjct: 58  HGGRIVAMGSSAPESVNKPEEEWRA 82


>At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autophagy
           9 protein GI:19912149 from [Arabidopsis thaliana]
          Length = 866

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +3

Query: 408 TECVVRFLGYENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGS 587
           T+C    LG    +   L  ++ S   +     I    Q  G+D +GSQ P LD      
Sbjct: 706 TDCWPPDLGIRGEDSRDLLNMEASTSGQFFRESILRHDQPEGEDSYGSQHP-LDGRNQWW 764

Query: 588 DRGVHSPEST 617
            RG HS  ST
Sbjct: 765 GRGNHSQIST 774


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,486,631
Number of Sequences: 28952
Number of extensions: 209126
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)