Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14r
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     27   0.23 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.40 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.6  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   2.1  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    23   3.7  
AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    22   6.5  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
 Frame = +1

Query: 559 RAEKSPLVSI-YNTVL*VS---FAQLIAICRANCVLPEPAIPHN------SVIVLAGIPL 708
           R EKSPL++  YN    +S   F QL     A+  L  PA+PHN      SVI   G+P 
Sbjct: 94  RLEKSPLLANGYNHSPHLSHMQFMQLPHPAAAHSALLSPAMPHNLTRHDGSVIKNQGMPT 153

Query: 709 LSILSK 726
           +  +++
Sbjct: 154 MEAIAR 159


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 401 TPNYLLLILHSSGF*TSSPVLPLSKYSLCEFYSLW 505
           +PNY+   LH S   TSSP +  + Y+     S+W
Sbjct: 185 SPNYIKPQLHVSTGSTSSPTIASATYTNSANSSIW 219


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 263 INMQT-RWVDQDLTDVEDEENSTAYKDSFTEK 171
           +N+Q  + V Q L++  + +NS  +KD F E+
Sbjct: 492 VNIQRMKQVYQQLSNYRNVDNSAKFKDGFQEQ 523


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 329 LLNSFVNYSRFICKQLNIGIICINMQTRW 243
           L+ SFV+Y  F+   + + I  I + T W
Sbjct: 390 LILSFVDYFVFLLCSILVNIAFIKLATEW 418


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 584 DTKGDFSALRIQKILEKC 531
           DTK D+ +L+  K +E+C
Sbjct: 33  DTKPDYKSLQELKYMERC 50


>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 527 YSFKEVAAIMSRIHISYIWTMEEL 456
           Y  +E+    SR H   ++T EEL
Sbjct: 7   YQLEELEKAFSRTHYPDVFTREEL 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,529
Number of Sequences: 336
Number of extensions: 4306
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)