Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14r
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    41   2e-04
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    41   2e-04
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    38   0.001
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    34   0.020
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   1.3  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   3.1  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   3.1  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    26   5.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.4  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    26   7.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   7.1  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    26   7.1  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   7.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   7.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.1  

>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = -3

Query: 725 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGDFSA 561
           LD +L  G+   +ITEL G   +GK+Q+   +A+ C             LYIDT+G F  
Sbjct: 131 LDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRP 190

Query: 560 LRIQKILEKCQYSFKEV 510
           +R+  + ++   + +EV
Sbjct: 191 VRLLAVADRYGLNGEEV 207


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
 Frame = -3

Query: 725 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYIDTKGDFSA 561
           LD  L+ GIP   +TE+CG +GSGK+Q  +Q+ +           +K  ++I T+   S 
Sbjct: 82  LDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTE---SG 138

Query: 560 LRIQKILEKCQY 525
           L  +++ E  +Y
Sbjct: 139 LETKRLFELARY 150


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -3

Query: 749 GMEYSVSSLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 573
           G  ++   LD+     G+    I+E+CG  G GKT LALQI  N A  +   V++++T  
Sbjct: 24  GFGFNSKLLDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITAN-ALLSGSRVIWVETCQ 82

Query: 572 DFSALRIQKILE 537
                R++++L+
Sbjct: 83  PIPMERLRQLLD 94


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = -3

Query: 728 SLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYIDTKGDFS 564
           +L+ +L  GI + +ITE+ G    GKTQ++  + +              V +IDT+G F 
Sbjct: 101 ALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMGGAEGKVAFIDTEGTFR 160

Query: 563 ALRIQKILEK 534
             RI+ I E+
Sbjct: 161 PDRIKAIAER 170


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -3

Query: 767 KPHKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIA 627
           +P KS+      +++ +  +R  P K I  L G+AG+GKT LA  IA
Sbjct: 393 QPSKSMRFNPRFTNITSDSDR--PDKRIMMLTGLAGAGKTTLAHVIA 437


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 310 FTNEFNNDKPSLLSSPRY*NIREGKESMTSNTKLSITNSPFFRFLN 447
           FT E NN+ P    +P    I    + M    + S+   PFFR ++
Sbjct: 293 FTKEINNNFPDRSETPTLQTIEAPTKLMKYTRRKSLFRFPFFRSIS 338


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 628 LLIVQKRLTKQCCILTPKGISQLLEFKRY*KNVNT 524
           LL+    +TKQ C+  PK + Q L+F  Y K ++T
Sbjct: 158 LLLQSSSITKQECMEEPKAVIQALDF--YSKQLDT 190


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 671 GIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSR 492
           G  G+GKT +A  +A NC+ +  K   ++    D  +  + +   + +  F+E   +   
Sbjct: 413 GPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPS 472

Query: 491 I 489
           I
Sbjct: 473 I 473


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 404 PNYLLLILHSSGF*TSSPVLPLSKYSLC 487
           P+ ++L+LH+SG      V+PL+  +LC
Sbjct: 160 PDDVMLVLHTSGTTGRPKVVPLTHKNLC 187


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -3

Query: 377 SLMFQYLGEDNKLGLSLLNSFVNYSRF 297
           +++ +YLGE N   +++++SFV++  F
Sbjct: 748 AVLGEYLGEGNDENIAIMHSFVDHMSF 774


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 677 LCGIAGSGKTQLALQIA 627
           +CG  G+GKT LA Q+A
Sbjct: 13  ICGTPGTGKTTLAEQVA 29


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 290 KQLNIGIICINMQTRWVDQDLTD-VEDEENSTAYKDSFTEKRYR 162
           K L   I+C   +TR ++Q++ D V  +EN T + + F + RY+
Sbjct: 31  KALEESILC---ETRKIEQEIKDQVVQKENKTYFNNKF-DNRYK 70


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 122 LELEKIKENDNENNSGIKI--TVLHSIDSDYENRP 24
           +E+   K ++N NN  +     ++H++ S+Y NRP
Sbjct: 54  IEMMSTKHDNNTNNLMVNAYWKLIHTVVSNYPNRP 88


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 338 GLSLLNSFVNYSRFICKQLNIGIICINMQTRWVDQDLTDVEDE 210
           G   + S+V  ++ + K   I II +NM TRWV+  L   E+E
Sbjct: 399 GAMYIGSYVARAKALEKN-TIQII-VNMMTRWVEAYLDQCENE 439


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 242 VDQDLTDVEDEENSTAYKDSFTEK 171
           VD+D  ++EDEE+    +D F E+
Sbjct: 153 VDEDEEELEDEEDEIGREDGFIEE 176


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = -3

Query: 791  QQWHHIP*KPHKSVGMEYS----VSSLDNM-----LNRGIPAKTITELCGIAGSGKTQLA 639
            Q W+ I  K  KS  ++Y+    + +LD +     LN  +        CG  GSGK+ L 
Sbjct: 2471 QSWYPIAGKTLKSSALKYAGNTVIPTLDTVRYAEFLNFSLTKNRCVIFCGPPGSGKSMLM 2530

Query: 638  L 636
            L
Sbjct: 2531 L 2531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,119
Number of Sequences: 5004
Number of extensions: 70910
Number of successful extensions: 222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)