Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e14r
(796 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19030| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_39235| Best HMM Match : BACK (HMM E-Value=2.3e-10) 37 0.016
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_4928| Best HMM Match : DUF590 (HMM E-Value=0) 32 0.47
SB_2785| Best HMM Match : ATP-synt_F (HMM E-Value=0.15) 29 3.3
SB_51308| Best HMM Match : ATP-synt_F (HMM E-Value=0.14) 29 3.3
SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_39087| Best HMM Match : ATP-synt_DE_N (HMM E-Value=4.1) 29 4.3
SB_34048| Best HMM Match : IncA (HMM E-Value=0.75) 29 4.3
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 29 4.3
SB_32878| Best HMM Match : IncA (HMM E-Value=0.31) 29 5.7
SB_28026| Best HMM Match : ATP-synt_F (HMM E-Value=1.5) 29 5.7
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 29 5.7
SB_4862| Best HMM Match : IncA (HMM E-Value=0.33) 29 5.7
SB_4562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_7076| Best HMM Match : IncA (HMM E-Value=0.74) 29 5.7
SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_58630| Best HMM Match : IncA (HMM E-Value=0.5) 28 7.6
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 28 7.6
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 28 7.6
SB_21432| Best HMM Match : IncA (HMM E-Value=0.44) 28 7.6
SB_15118| Best HMM Match : IncA (HMM E-Value=0.44) 28 7.6
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_5510| Best HMM Match : IncA (HMM E-Value=0.78) 28 7.6
>SB_19030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 61.3 bits (142), Expect = 9e-10
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = -3
Query: 722 DNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKI 543
D +L+ G+ + ITEL G AGSGKTQ + IA + K LYIDT G FS+ R+Q+I
Sbjct: 23 DELLDGGLYSGEITELVGAAGSGKTQACMSIASSVTLNLEKNALYIDTGGAFSSQRVQEI 82
Query: 542 LEKCQYSFKEVAAIMS 495
+ + S E +I S
Sbjct: 83 ICEKDASLSEQDSIAS 98
>SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = -3
Query: 725 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYIDTKGDFSA 561
LD +L GI +ITEL G +GKTQL +A+ C LYIDT+G F
Sbjct: 108 LDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDHGGAEGKCLYIDTEGTFRP 167
Query: 560 LRIQKILEKCQYSFKEV 510
R+ + E+ + +EV
Sbjct: 168 ERLLAVAERYGLNGQEV 184
>SB_39235| Best HMM Match : BACK (HMM E-Value=2.3e-10)
Length = 419
Score = 37.1 bits (82), Expect = 0.016
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Frame = -3
Query: 752 VGMEYSVSSLDNML----NRGIPAKTITELCGIAGSGKTQLALQIAINC--AKETHK--- 600
+G + S+ LD L GI A + E G G GKT++ L +A NC + H+
Sbjct: 13 LGSKQSLDGLDKKLFVDIPDGIKAGDVVEFYGKEGCGKTEMLLHLAANCIMPRSWHELYL 72
Query: 599 -----TVLYIDTKGDFSALRIQKILE 537
+V++IDT F LR+ I+E
Sbjct: 73 GGKGVSVIFIDTDYHFQILRLIAIME 98
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 749 GMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 633
G E +S LD L+ T+T + G+ G+GKT +AL+
Sbjct: 351 GREKEMSMLDGPLDESKQTCTLTLISGLGGTGKTSIALE 389
>SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -3
Query: 713 LNRGIPAKTITELCGIAGSGKTQL 642
LN IPAK IT + G +GSGKT L
Sbjct: 244 LNMTIPAKKITAIVGTSGSGKTTL 267
>SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 897
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 278 IGIICINMQT---RWVDQDLTDVEDEENSTAYKDSFTEKRY 165
I +ICIN+ W+ LT+ E+ T Y+DSFT K Y
Sbjct: 500 INLICINILKFVYSWLAVKLTNWENPRTRTDYEDSFTYKMY 540
>SB_2785| Best HMM Match : ATP-synt_F (HMM E-Value=0.15)
Length = 379
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 242 SAGLGVSLSGIGALI--GAPLAGVAGLVGVVGAGAGAVSRGLTSKVAKHEDTVVLAESKK 299
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 300 NSISEL-VSKALQDGRISDEEFRLIL 324
>SB_51308| Best HMM Match : ATP-synt_F (HMM E-Value=0.14)
Length = 246
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 86 SAGLGVSLSGIGALI--GAPPAGVAGLVGVVGAGAGAVSRGLTSKVAKHEDTVVLAESKK 143
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 144 NSISEL-VSKALQDGRISDEEFRLIL 168
>SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK+ VL K
Sbjct: 86 SAGLGVSLSGIGALI--GAPLAEVAGLVGVVGAGAGAVSRGLTSKVAKQEDTMVLGESKK 143
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S E I+
Sbjct: 144 NSISEL-VSKALQDGRISDDEFRLIL 168
>SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK+ VL K
Sbjct: 86 SAGLGVSLSGIGALI--GAPLAEVAGLVGVVGAGAGAVSRGLTSKVAKQEDTMVLGESKK 143
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S E I+
Sbjct: 144 NSISEL-VSKALQDGRISDDEFRLIL 168
>SB_39087| Best HMM Match : ATP-synt_DE_N (HMM E-Value=4.1)
Length = 171
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 89 SAGLGVSLSGIGVLI--GAPLAGVARLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 146
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 147 NSISEL-VSKALQDGRISDEEFRLIL 171
>SB_34048| Best HMM Match : IncA (HMM E-Value=0.75)
Length = 403
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 266 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGIVSRGLTRKVAKHEDTIVLAESKK 323
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K+L+ + S +E I+
Sbjct: 324 NSISEL-VSKVLQDGRISDEEFRLIL 348
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -3
Query: 236 QDLTDVEDEENSTAYKDSFTEKRYRCLGRYWQHIPTLVLELEKIKEN----DNENN 81
QDLT+ N D+F+ +R L + Q TL LE+ ++N D+ENN
Sbjct: 865 QDLTENLINANDVDEDDAFSRRRVEALRKMEQENKTLADVLEEYEDNLRKLDHENN 920
>SB_32878| Best HMM Match : IncA (HMM E-Value=0.31)
Length = 183
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 46 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTVVLAESKK 103
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 104 NSISEL-VSKALQDGRISDEEFRLIL 128
>SB_28026| Best HMM Match : ATP-synt_F (HMM E-Value=1.5)
Length = 171
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 34 SAGLGVSLSGIGVLI--GAPLAGVDGLVGVVGAGAGVISRGLTSKVAKHEDTVVLAESKK 91
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 92 NSISEL-VSKALQDGRISDEEFRLIL 116
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = -3
Query: 296 ICKQLNIGIICINMQTRWVDQDLTDVEDEENSTAYKDSFTEKRYRCLGRYWQHIPTLVLE 117
+C+++ + +I N + VD++ D +++++ A KD E+ G +H L+
Sbjct: 254 VCQEMTLRLINPNPEDEGVDEEDDDKDEQKHDIADKDEDEEEEEEAAGE--KHENKSELK 311
Query: 116 LEKIKENDNEN 84
+ +NEN
Sbjct: 312 QSNTDQINNEN 322
>SB_4862| Best HMM Match : IncA (HMM E-Value=0.33)
Length = 183
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 46 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLVESKK 103
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 104 NSISEL-VSKALQDGRISDEEFRLIL 128
>SB_4562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 91 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTVVLAESKK 148
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 149 NSISEL-VSKALQDGRISDEEFRLIL 173
>SB_7076| Best HMM Match : IncA (HMM E-Value=0.74)
Length = 282
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P I L G+ G+G ++ + AK VL K
Sbjct: 145 SAGLGVSLSGIGVLI--GAPLAGIAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 202
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 203 NSISQL-VSKALQDGRISDEEFRLIL 227
>SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ GSG ++ + AK VL K
Sbjct: 294 SAGIGASLSGIGVLI--GAPLTGVAVLVGVVGSGAGVVSRGLTSKVAKHEDTMVLAESKK 351
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 352 NSISEL-VSKALQDGRISDEEFRLIL 376
>SB_58630| Best HMM Match : IncA (HMM E-Value=0.5)
Length = 307
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 170 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 227
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 228 NSISEL-VSKALQDGRISDEEFRLIL 252
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 281 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 338
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 339 NSISEL-VSKALQDGRISDEEFRLIL 363
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 448 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAKAVSRGLTGKVAKHEDTMVLAESKK 505
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 506 NSISEL-VSKALQDGRISDEEFRLIL 530
>SB_21432| Best HMM Match : IncA (HMM E-Value=0.44)
Length = 225
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 88 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 145
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 146 NSISEL-VSKALQDGRISDEEFRLIL 170
>SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)
Length = 835
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 698 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 755
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 756 NSISEL-VSKALQDGRISDEEFRLIL 780
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 281 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 338
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 339 NSISEL-VSKALQDGRISDEEFRLIL 363
>SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 203 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 260
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 261 NSISEL-VSKALQDGRISDEEFRLIL 285
>SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 88 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTVVLAGSKK 145
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 146 NSISEL-VSKALQDGRISDEEFRLIL 170
>SB_5510| Best HMM Match : IncA (HMM E-Value=0.78)
Length = 225
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 755 SVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
S G+ S+S + ++ G P + L G+ G+G ++ + AK VL K
Sbjct: 88 SAGLGVSLSGIGVLI--GAPLAGVAGLVGVVGAGAGVVSRGLTSKVAKHEDTMVLAESKK 145
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIM 498
S L + K L+ + S +E I+
Sbjct: 146 NSISEL-VSKALQDGRISDEEFRLIL 170
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,500,214
Number of Sequences: 59808
Number of extensions: 467475
Number of successful extensions: 1243
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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