Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14r
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical ...    41   9e-04
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    41   9e-04
AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short i...    41   9e-04
AB011382-1|BAA24982.1|  357|Caenorhabditis elegans RecA/Rad51/Dm...    41   9e-04

>AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6b protein.
          Length = 357

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = -3

Query: 731 SSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGDF 567
           +SLD +L  GI   +ITE+ G   +GKTQL   +A+ C             +YIDT   F
Sbjct: 123 ASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATF 182

Query: 566 SALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 447
              RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 183 RPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = -3

Query: 731 SSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGDF 567
           +SLD +L  GI   +ITE+ G   +GKTQL   +A+ C             +YIDT   F
Sbjct: 161 ASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATF 220

Query: 566 SALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 447
              RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 221 RPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 257


>AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short
           isoform protein.
          Length = 357

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = -3

Query: 731 SSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGDF 567
           +SLD +L  GI   +ITE+ G   +GKTQL   +A+ C             +YIDT   F
Sbjct: 123 ASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATF 182

Query: 566 SALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 447
              RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 183 RPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219


>AB011382-1|BAA24982.1|  357|Caenorhabditis elegans
           RecA/Rad51/Dmc1-like protein protein.
          Length = 357

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = -3

Query: 731 SSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGDF 567
           +SLD +L  GI   +ITE+ G   +GKTQL   +A+ C             +YIDT   F
Sbjct: 123 ASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATF 182

Query: 566 SALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 447
              RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 183 RPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,845,748
Number of Sequences: 27780
Number of extensions: 376619
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)