Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e14r
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45280.1 68415.m05636 DNA repair family protein contains simi... 58 7e-09
At3g22880.1 68416.m02884 meiotic recombination protein, putative... 46 4e-05
At2g28560.1 68415.m03470 expressed protein 41 8e-04
At5g20850.1 68418.m02476 DNA repair protein RAD51, putative iden... 40 0.001
At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ... 40 0.003
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR... 35 0.054
At5g57450.2 68418.m07178 DNA repair family protein contains simi... 34 0.095
At5g57450.1 68418.m07177 DNA repair family protein contains simi... 34 0.095
At5g04720.1 68418.m00482 disease resistance protein (CC-NBS-LRR ... 31 0.67
At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR... 31 1.2
At5g64520.2 68418.m08107 DNA repair protein-related contains wea... 30 1.5
At5g64520.1 68418.m08106 DNA repair protein-related contains wea... 30 1.5
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 29 2.7
At2g19490.1 68415.m02278 recA family protein contains Pfam profi... 29 3.6
>At2g45280.1 68415.m05636 DNA repair family protein contains
similarity to Swiss-Prot:O43502 DNA repair protein RAD51
homolog 3 [Homo sapiens]
Length = 363
Score = 58.0 bits (134), Expect = 7e-09
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = -3
Query: 737 SVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN------CAKETHKTVLYIDTK 576
S S LDN+L GI + +TE+ G+ G GKTQ+ +Q+++N C K + YIDT+
Sbjct: 108 SCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAI-YIDTE 166
Query: 575 GDFSALRIQKILEKCQYSFKEVAAIMSR 492
G F R +I E C +E M +
Sbjct: 167 GSFMVERALQIAEACVEDMEEYTGYMHK 194
>At3g22880.1 68416.m02884 meiotic recombination protein, putative
similar to Swiss-Prot:Q14565 meiotic recombination
protein DMC1/LIM15 homolog [Homo sapiens]; contains
non-consensus AT/AC non-consensus splice sites at intron
14
Length = 344
Score = 45.6 bits (103), Expect = 4e-05
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = -3
Query: 728 SLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFS 564
+LD++L GI ITE G SGKTQLA + + T+ V YIDT+G F
Sbjct: 114 ALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFR 173
Query: 563 ALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNL 435
RI I E+ + A++ I + +T E NL L
Sbjct: 174 PDRIVPIAERFG---MDPGAVLDNIIYARAYTYEHQYNLLLGL 213
>At2g28560.1 68415.m03470 expressed protein
Length = 320
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = -3
Query: 761 HKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKT 597
H S + + LD+ L GIP +TEL G G GK+Q +++A++ +
Sbjct: 48 HLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGR 107
Query: 596 VLYIDTKGDFSALRIQKILEKCQYSFKEV 510
V+YID + FS+ ++++E SF EV
Sbjct: 108 VIYIDVESKFSS---RRVIEMGLESFPEV 133
>At5g20850.1 68418.m02476 DNA repair protein RAD51, putative
identical to Rad51-like protein [Arabidopsis thaliana]
GI:2388778; strong similarity to SP|Q06609 DNA repair
protein RAD51 homolog 1 {Homo sapiens}; contains Pfam
profile PF00633: Helix-hairpin-helix motif
Length = 342
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -3
Query: 725 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSA 561
LD +L GI +ITEL G SGKTQL + + C + +YID +G F
Sbjct: 112 LDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRP 171
Query: 560 LRIQKILEK 534
R+ +I ++
Sbjct: 172 QRLLQIADR 180
>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 857
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -3
Query: 761 HKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 630
H VG+E S+ L N L G +T +CG+ G GKT LA QI
Sbjct: 162 HNLVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQI 205
>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1607
Score = 35.1 bits (77), Expect = 0.054
Identities = 23/107 (21%), Positives = 45/107 (42%)
Frame = -3
Query: 752 VGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 573
VGME + + +L + +CG+ GSGKT +A ++ + + + ID KG
Sbjct: 269 VGMEAHMEKMKELLGLDSNKVRLIGICGLPGSGKTTIAKRLYQQLLPQFELSTIIIDIKG 328
Query: 572 DFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 432
+ + K Q ++ +++ I +E + K+ K
Sbjct: 329 CYPRTCYNEDDRKLQLQSHLLSQLLNHKFTGEILQLEAAHEMLKDKK 375
>At5g57450.2 68418.m07178 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 34.3 bits (75), Expect = 0.095
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 725 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 624
LD L GI ++TE+ +G GKTQL LQ+++
Sbjct: 28 LDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSL 61
>At5g57450.1 68418.m07177 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 34.3 bits (75), Expect = 0.095
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 725 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 624
LD L GI ++TE+ +G GKTQL LQ+++
Sbjct: 28 LDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSL 61
>At5g04720.1 68418.m00482 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 811
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 752 VGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIA 627
VG++ + ML + I + + + G++GSGKT LA ++A
Sbjct: 180 VGLDLGKRKVKEMLFKSIDGERLIGISGMSGSGKTTLAKELA 221
>At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 986
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 752 VGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKTQLA 639
VG+E+ + L ++L I +CG AG GKT +A
Sbjct: 179 VGLEFHIRELSSLLYLDYEQVRIVGICGPAGIGKTTIA 216
>At5g64520.2 68418.m08107 DNA repair protein-related contains weak
similarity to DNA-repair protein XRCC2 (X-ray repair
cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
sapiens]
Length = 342
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Frame = -3
Query: 695 AKTITELCGIAGSGKTQLALQIAINCA-----KETH-----KTVLYIDTKGDFSALRIQK 546
A + E+ G + S KTQ+ +Q AI+C H K VL++D F LR+ +
Sbjct: 42 AGNVVEITGASTSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQ 101
Query: 545 ILE 537
+L+
Sbjct: 102 MLK 104
>At5g64520.1 68418.m08106 DNA repair protein-related contains weak
similarity to DNA-repair protein XRCC2 (X-ray repair
cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
sapiens]
Length = 372
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Frame = -3
Query: 695 AKTITELCGIAGSGKTQLALQIAINCA-----KETH-----KTVLYIDTKGDFSALRIQK 546
A + E+ G + S KTQ+ +Q AI+C H K VL++D F LR+ +
Sbjct: 42 AGNVVEITGASTSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQ 101
Query: 545 ILE 537
+L+
Sbjct: 102 MLK 104
>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
repair protein recA, chloroplast [Precursor] SP:Q39199
from [Arabidopsis thaliana] ;contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 439
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -3
Query: 734 VSSLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 567
+ +LD L G+P + E+ G SGKT LAL AI ++ + +D + F
Sbjct: 121 ILTLDLALGGGLPKGRVVEIYGPESSGKTTLALH-AIAEVQKLGGNAMLVDAEHAF 175
>At2g19490.1 68415.m02278 recA family protein contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 430
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 704 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
G+P + E+ G SGKT LAL + K+ T +++D +
Sbjct: 108 GLPKGRVVEIYGPEASGKTTLALHVIAEAQKQ-GGTCVFVDAE 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,453,423
Number of Sequences: 28952
Number of extensions: 337115
Number of successful extensions: 848
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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