Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e14f
(636 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like... 53 5e-06
UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo sapie... 46 6e-04
UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=4... 46 6e-04
UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1; Dicty... 40 0.066
UniRef50_Q9SX38 Cluster: Putative disease resistance protein At1... 35 1.9
UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter deh... 34 3.3
UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1; Schizosa... 34 3.3
UniRef50_Q54V81 Cluster: ABC transporter C family protein; n=2; ... 33 4.4
UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to RAD51L2/RA... 33 5.8
UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in s... 33 5.8
UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p... 33 5.8
UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:... 33 5.8
UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;... 33 7.6
UniRef50_Q8I2W7 Cluster: DNA helicase, putative; n=3; Plasmodium... 33 7.6
UniRef50_Q5CEW3 Cluster: Putative uncharacterized protein; n=2; ... 33 7.6
UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=3... 33 7.6
UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5... 33 7.6
>UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like 3;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
RAD51-like 3 - Tribolium castaneum
Length = 339
Score = 53.2 bits (122), Expect = 5e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +1
Query: 1 DVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK 180
DV+K L ++ T+ DF++ D +++ I +L+ ++ +N +L KFSA +NG F
Sbjct: 41 DVVKALHGRKVWTVGDFVKVDTQQIIKIARLNFREVRAVKNYLLKKFSATPVNGFDFYKN 100
Query: 181 IRKGTISIKSGVK 219
+ K T I +G+K
Sbjct: 101 VLKNTAIIPTGIK 113
>UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo
sapiens|Rep: Isoform 4 of O75771 - Homo sapiens (Human)
Length = 283
Score = 46.4 bits (105), Expect = 6e-04
Identities = 20/72 (27%), Positives = 44/72 (61%)
Frame = +1
Query: 1 DVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK 180
++I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+ ++
Sbjct: 15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74
Query: 181 IRKGTISIKSGV 216
++ T + +G+
Sbjct: 75 LKTSTAILSTGI 86
>UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=42;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 4 -
Homo sapiens (Human)
Length = 328
Score = 46.4 bits (105), Expect = 6e-04
Identities = 20/72 (27%), Positives = 44/72 (61%)
Frame = +1
Query: 1 DVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK 180
++I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+ ++
Sbjct: 15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74
Query: 181 IRKGTISIKSGV 216
++ T + +G+
Sbjct: 75 LKTSTAILSTGI 86
>UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative DNA repair
protein - Dictyostelium discoideum AX4
Length = 381
Score = 39.5 bits (88), Expect = 0.066
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S +D MLN G P K ITE+CG+ G GK
Sbjct: 69 SEIDQMLNGGTPLKKITEICGVPGIGK 95
>UniRef50_Q9SX38 Cluster: Putative disease resistance protein
At1g50180; n=2; Arabidopsis thaliana|Rep: Putative
disease resistance protein At1g50180 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 839
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 479 QQWQSYNNKKPHKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGK 622
+Q QS+ H VG+E S+ L N L G +T +CG+ G GK
Sbjct: 151 EQRQSFPYVVEHNLVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGK 198
>UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter
dehalogenans 2CP-C|Rep: Protein recA - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 494
Score = 33.9 bits (74), Expect = 3.3
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 539 VSSLDNMLNRGIPAKTITELCGIAGSGK 622
V LD +L GIPAK+IT + G GSGK
Sbjct: 17 VEGLDQVLGGGIPAKSITVVSGEPGSGK 44
>UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1;
Schizosaccharomyces pombe|Rep: DNA repair protein rhp57
- Schizosaccharomyces pombe (Fission yeast)
Length = 354
Score = 33.9 bits (74), Expect = 3.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 548 LDNMLNRGIPAKTITELCGIAGSGK 622
LD L+ GIP +TE+CG +GSGK
Sbjct: 82 LDETLHGGIPVGQLTEICGESGSGK 106
>UniRef50_Q54V81 Cluster: ABC transporter C family protein; n=2;
Dictyostelium discoideum|Rep: ABC transporter C family
protein - Dictyostelium discoideum AX4
Length = 1359
Score = 33.5 bits (73), Expect = 4.4
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 473 NEQQWQSYNNKKPHKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKHS 628
N+QQ Q ++ + + +L+N +N PA +T +CG+ GSGK S
Sbjct: 460 NQQQQQQQQQQQQQQQQQQQQQSYTLNN-INFKAPAGKLTIICGVVGSGKTS 510
>UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to
RAD51L2/RAD51C protein; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RAD51L2/RAD51C
protein - Strongylocentrotus purpuratus
Length = 425
Score = 33.1 bits (72), Expect = 5.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 548 LDNMLNRGIPAKTITELCGIAGSGK 622
LD ML G+P ITE+CG G GK
Sbjct: 130 LDEMLGGGVPMCKITEICGAPGVGK 154
>UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
RecA-superfamily ATPase implicated in signal
transduction-like protein - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 214
Score = 33.1 bits (72), Expect = 5.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 533 YSVSSLDNMLNRGIPAKTITELCGIAGSGK 622
+ + LD MLN G+P TIT + G G+GK
Sbjct: 143 FGIRDLDEMLNGGLPEGTITIISGGTGTGK 172
>UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p -
Drosophila melanogaster (Fruit fly)
Length = 341
Score = 33.1 bits (72), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 527 MEYSVSSLDNMLNRGIPAKTITELCGIAGSGK 622
+ + S+LD G+ + ITELCG AG GK
Sbjct: 88 VSFGCSALDRCTGGGVVTRGITELCGAAGVGK 119
>UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:
ENSANGP00000029732 - Anopheles gambiae str. PEST
Length = 290
Score = 33.1 bits (72), Expect = 5.8
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = +2
Query: 548 LDNMLNRGIPAKTITELCGIAGSGK 622
LD L GIP ITELCG GSGK
Sbjct: 26 LDLALGSGIPEGMITELCGPPGSGK 50
>UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;
Pan troglodytes|Rep: PREDICTED: RAD51 homolog C - Pan
troglodytes
Length = 461
Score = 32.7 bits (71), Expect = 7.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 150 SALDDILGGGVPLMKTTEICGAPGVGK 176
>UniRef50_Q8I2W7 Cluster: DNA helicase, putative; n=3;
Plasmodium|Rep: DNA helicase, putative - Plasmodium
falciparum (isolate 3D7)
Length = 728
Score = 32.7 bits (71), Expect = 7.6
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -1
Query: 420 QSYRN-GQDYDNCPYRLTICLTTSRSKFINFSSTRITIFGLVQKPTRGKYCS*LELNYNK 244
+SYRN + D CPY T C T + +KF+ R F + K + N N
Sbjct: 197 KSYRNLNKILDICPYVRTYCCTATATKFVEKDIIRNLNFYIFNKDCDNNINNNNINNNNN 256
Query: 243 VYQSYKVFLYSGLNTNC 193
++ + K Y N NC
Sbjct: 257 IHNNNK---YDDHNNNC 270
>UniRef50_Q5CEW3 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium hominis
Length = 321
Score = 32.7 bits (71), Expect = 7.6
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Frame = -2
Query: 320 VLQYLD*YKSQREVSTVPS*SLIITKCTKVIKCFFTPDLIL--IVPFRILSIKQLP---- 159
+L+ L Y S ++ PS S I + C F P+L+L ++ + L I+ +P
Sbjct: 102 LLKLLTWYLSWNKILEYPSASFSIQHSSPFQVCVFAPNLLLGCVMTYPYL-IEDIPVTVL 160
Query: 158 LITGAENFVNIRFLASKICGMLSLHMFDNFSTSS*RKSN 42
L AE ++N L+ K +L++ F +F++++ + N
Sbjct: 161 LCANAEYYLNEHGLSEKCLSLLNIINFSDFTSTTKKMLN 199
>UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=32;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 3 -
Homo sapiens (Human)
Length = 376
Score = 32.7 bits (71), Expect = 7.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5;
Magnoliophyta|Rep: DNA repair protein RAD51 homolog 3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 363
Score = 32.7 bits (71), Expect = 7.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 536 SVSSLDNMLNRGIPAKTITELCGIAGSGK 622
S S LDN+L GI + +TE+ G+ G GK
Sbjct: 108 SCSDLDNILGGGISCRDVTEIGGVPGIGK 136
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,369,815
Number of Sequences: 1657284
Number of extensions: 11697496
Number of successful extensions: 26927
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26927
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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