Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14f
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    34   0.020
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.0  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.1  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.1  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    25   9.1  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.1  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   9.1  

>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 548 LDNMLNRGIPAKTITELCGIAGSGK 622
           LD  L+ GIP   +TE+CG +GSGK
Sbjct: 82  LDETLHGGIPVGQLTEICGESGSGK 106


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 290  GFCTSPNIVIRVEEKLINLLLLVVRHIVNLYGQLS 394
            GFC +PN  +R     I+  +LV   I NLY  L+
Sbjct: 1003 GFCITPNAYLRSTWNCIDFFVLVTLWI-NLYAVLT 1036


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 423 LQSYRNGQDYDNCPYRLTICLTTSRS-KFINFSSTRITIFGL 301
           L ++  G+ +D      T  +T  +    INF+S  ITIFGL
Sbjct: 120 LMTWTTGKVFDALSQYATSQITLGKMISLINFNSLLITIFGL 161


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 510  GFLLLYDCHCCSFHSHG 460
            G LL +  HCCSF+  G
Sbjct: 1846 GKLLCFQSHCCSFNGIG 1862


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 136 KFSAPVINGSCFIDKIRKGTISIK 207
           K S PV++   F DK+ + TI +K
Sbjct: 98  KISRPVVSEDTFKDKLPRATIPVK 121


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 13  MLFQSRIITILDFLQEDVEKLSNIC 87
           ++ Q   I +L+ LQ DVE L+N C
Sbjct: 52  LIMQDIYIELLELLQVDVEILANRC 76


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 383 HTG*QYALPQVEASLLIFPLL-VLQYLD*YKSQREVSTVPS*SLIITKCTKVIKC 222
           HT   + LP    S L+FP L        Y+   +V  VPS  LI T    V +C
Sbjct: 448 HTDEDFPLPSPSLSSLLFPTLRNFAKKSWYEKLMDVLAVPS-VLIFTLALPVYQC 501


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 405 GQDYDNCPYRLTICLTTSRSKFINFSSTRITIFGLVQKPTRGKY 274
           G DY++  +R+ I       KF N     IT +  + + T+G Y
Sbjct: 72  GYDYESKRHRIVI---RGYDKFFNIDEVPITTWDALSQHTKGPY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,425
Number of Sequences: 5004
Number of extensions: 54964
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)