Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e14f
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0047 - 15872817-15872911,15873648-15873897 30 1.8
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 29 2.3
02_04_0256 + 21331396-21332268 29 2.3
01_06_0118 + 26612720-26613237,26613480-26613492 29 2.3
11_06_0342 - 22523610-22524332 29 3.1
05_01_0163 - 1125364-1125422,1126062-1126205,1126640-1126756,112... 29 3.1
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160... 28 7.1
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 28 7.1
>06_03_0047 - 15872817-15872911,15873648-15873897
Length = 114
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 70 KLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 216
+ SN C++ I AR ++ + +P+ NGS I K G + +K V
Sbjct: 36 RTSNGCQICIRPPFLAREYLMERSQSPLSNGSGIITKFHPGHLQMKKQV 84
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 29.5 bits (63), Expect = 2.3
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Frame = +2
Query: 296 CTSPNIVIRVE--EKLINLLLLVVRHIVNLYGQLS*SCPFL*LCNVTISYG--LMEYRMP 463
CT+ I+++V+ L+NL +LVV ++ NL S L YG L +
Sbjct: 452 CTNAIILVQVDMSSPLVNLSVLVVSYLQNLRSSFSGLTLCLKQRTGDQYYGGPLFRDKSH 511
Query: 464 *LWNEQQWQSYNNKKPHKSVGMEYSVSSLDNMLNRGIPAKTITEL-CGIAGSGKHS 628
+ QW +KK + GM+ S ++ G T TE+ +AG+ K S
Sbjct: 512 LIGTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTS 567
>02_04_0256 + 21331396-21332268
Length = 290
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 548 LDNMLNRGIPAKTITELCGIAGSGK 622
LD +L+ G+P ++TE+ G + SGK
Sbjct: 50 LDRLLSGGLPPASVTEIAGESASGK 74
>01_06_0118 + 26612720-26613237,26613480-26613492
Length = 176
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 251 ITKCTKVIKCFFTPDLILIVPFRILSIKQLPLI 153
+TK +KCF+ P + +I+ F +L LP+I
Sbjct: 1 MTKSDDDLKCFYVPIVTMILAFNVLVFIVLPII 33
>11_06_0342 - 22523610-22524332
Length = 240
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 515 KSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGK 622
+SVGME ++ L L G+P + + G G GK
Sbjct: 119 ESVGMEDAIGKLGAWLTEGLPDLRVLAVVGFGGLGK 154
>05_01_0163 -
1125364-1125422,1126062-1126205,1126640-1126756,
1126835-1126926,1127942-1128022,1128323-1128378,
1128496-1128559,1128645-1128748,1129578-1129724,
1129876-1129989,1130070-1130153
Length = 353
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 536 SVSSLDNMLNRGIPAKTITELCGIAGSGK 622
++ LD L+ GIPA +TE+ G +G GK
Sbjct: 85 TLRGLDEALHGGIPAGKLTEVVGPSGIGK 113
>12_01_0212 -
1605544-1605647,1605799-1605842,1606189-1606230,
1606306-1606394,1606477-1606521,1606801-1606845,
1606874-1606981,1607065-1607150,1607553-1607640,
1608185-1608385,1608790-1608865,1608951-1609000,
1609082-1609144,1609225-1609278,1609395-1609497,
1610010-1610050,1610654-1610685,1612086-1612224
Length = 469
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 163 YR*SPAQKTSLIF--DSLLPKFVVCLVCICLTIF 68
Y PA+K +F DSL +F L C+C+++F
Sbjct: 141 YLSQPAEKFPNVFSPDSLFARFPYFLPCLCISVF 174
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 163 YR*SPAQKTSLIF--DSLLPKFVVCLVCICLTIF 68
Y PA+K +F DSL +F L C+C+++F
Sbjct: 191 YLSQPAEKFPNVFSPDSLFARFPYFLPCLCISVF 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,992
Number of Sequences: 37544
Number of extensions: 295603
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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