Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14f
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_296| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)                   33   0.19 
SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.45 
SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_19030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_44079| Best HMM Match : Keratin_B2 (HMM E-Value=0.3)                28   7.3  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_18703| Best HMM Match : DNA_pol_A (HMM E-Value=6.6e-05)             27   9.7  
SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35)           27   9.7  

>SB_296| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)
          Length = 338

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -2

Query: 236 KVIKCFFTPDLILIVPFRILSIKQLPLITGAENF-VNIRFLASKICGMLSLH 84
           K IK FF   +I ++P+ +L++  + +  G  +F V + F+  ++ G+L+L+
Sbjct: 245 KDIKMFFAIIVIFVIPYTLLTMYLITMAIGGFSFSVPVSFIIRRVTGVLALY 296


>SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 55  QEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRK 189
           +ED+EK S   + S   + E +N +LTK   P+I+   F+D I+K
Sbjct: 286 REDLEKESRAREESRHLLKELKNVLLTKSKDPLISHEGFVDPIKK 330


>SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 55  QEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRK 189
           +ED+EK S   + S   + E +N +LTK   P+I+   F+D I+K
Sbjct: 159 REDLEKESRAREESRHLLKELKNVLLTKSKDPLISHEGFVDPIKK 203


>SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 560 LNRGIPAKTITELCGIAGSGK 622
           LN  IPAK IT + G +GSGK
Sbjct: 244 LNMTIPAKKITAIVGTSGSGK 264


>SB_19030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 551 DNMLNRGIPAKTITELCGIAGSGK 622
           D +L+ G+ +  ITEL G AGSGK
Sbjct: 23  DELLDGGLYSGEITELVGAAGSGK 46


>SB_44079| Best HMM Match : Keratin_B2 (HMM E-Value=0.3)
          Length = 285

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 542 RHYTPFLLTCEVFYCYMIAIAAHSIVMA 459
           +H+T  L++  +F+C    +A HS V+A
Sbjct: 2   KHFTDTLISANIFWCIHWKLALHSPVLA 29


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 500 NKKPHKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGKHS 628
           N+ P+   G E  +S LD  L+      T+T + G+ G+GK S
Sbjct: 344 NRNPY-FCGREKEMSMLDGPLDESKQTCTLTLISGLGGTGKTS 385


>SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 754

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 536 YTPFLLTCEVFYCYMIAIAAHSIVMAFCIPSNHNL*LHCKVTEMGRIMIIAH 381
           ++  +LTC V Y   +   A S   +FC  S H+  +   +T++G ++   H
Sbjct: 51  FSKMMLTCLVLYFNCLVAVATSSEQSFCPASIHS--VGAPITQVGLVLRSRH 100


>SB_18703| Best HMM Match : DNA_pol_A (HMM E-Value=6.6e-05)
          Length = 610

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 52  LQEDVEKLSNICKLSIPQILEARNRILTKFSAPVIN 159
           LQ D+EK + +   S  Q+  AR+R+  KF+ P  N
Sbjct: 63  LQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFN 98


>SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35)
          Length = 587

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 552 SKLET-LYSIPTDL*GFLLLYDCH 484
           SK+ET LYS PTD    LLL  CH
Sbjct: 87  SKIETDLYSKPTDKHQHLLLSSCH 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,704
Number of Sequences: 59808
Number of extensions: 370148
Number of successful extensions: 914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)