Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e14f
(636 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y15572-1|CAA75681.1| 328|Homo sapiens R51H3 protein. 46 9e-05
BC014422-1|AAH14422.1| 328|Homo sapiens RAD51-like 3 (S. cerevi... 46 9e-05
AY623116-1|AAT38112.1| 328|Homo sapiens RAD51-like 3 (S. cerevi... 46 9e-05
AB013341-1|BAA25914.1| 328|Homo sapiens Trad protein. 46 9e-05
AB018363-1|BAA33782.1| 85|Homo sapiens TRAD-d7 protein. 37 0.052
AB018362-1|BAA33781.1| 85|Homo sapiens TRAD-d6 protein. 37 0.052
AB018361-1|BAA33780.1| 68|Homo sapiens TRAD-d5 protein. 34 0.49
AB018360-1|BAA33779.1| 95|Homo sapiens TRAD-d4 protein. 34 0.49
BT007339-1|AAP36003.1| 134|Homo sapiens RAD51 homolog C (S. cer... 33 1.1
BC107753-1|AAI07754.1| 376|Homo sapiens RAD51 homolog C (S. cer... 33 1.1
BC101485-1|AAI01486.1| 134|Homo sapiens RAD51C protein protein. 33 1.1
BC093930-1|AAH93930.1| 134|Homo sapiens RAD51C protein protein. 33 1.1
BC000667-1|AAH00667.1| 134|Homo sapiens RAD51C protein protein. 33 1.1
AY623112-1|AAT38108.1| 376|Homo sapiens RAD51 homolog C (S. cer... 33 1.1
AF029670-1|AAC39605.1| 135|Homo sapiens Rad51C truncated protei... 33 1.1
AF029669-1|AAC39604.1| 376|Homo sapiens Rad51C protein. 33 1.1
AB065829-1|BAC06048.1| 313|Homo sapiens seven transmembrane hel... 31 4.5
AB065827-1|BAC06046.1| 313|Homo sapiens seven transmembrane hel... 30 7.9
>Y15572-1|CAA75681.1| 328|Homo sapiens R51H3 protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/72 (27%), Positives = 44/72 (61%)
Frame = +1
Query: 1 DVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK 180
++I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+ ++
Sbjct: 15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74
Query: 181 IRKGTISIKSGV 216
++ T + +G+
Sbjct: 75 LKTSTAILSTGI 86
>BC014422-1|AAH14422.1| 328|Homo sapiens RAD51-like 3 (S.
cerevisiae) protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/72 (27%), Positives = 44/72 (61%)
Frame = +1
Query: 1 DVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK 180
++I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+ ++
Sbjct: 15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74
Query: 181 IRKGTISIKSGV 216
++ T + +G+
Sbjct: 75 LKTSTAILSTGI 86
>AY623116-1|AAT38112.1| 328|Homo sapiens RAD51-like 3 (S.
cerevisiae) protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/72 (27%), Positives = 44/72 (61%)
Frame = +1
Query: 1 DVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK 180
++I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+ ++
Sbjct: 15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74
Query: 181 IRKGTISIKSGV 216
++ T + +G+
Sbjct: 75 LKTSTAILSTGI 86
>AB013341-1|BAA25914.1| 328|Homo sapiens Trad protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/72 (27%), Positives = 44/72 (61%)
Frame = +1
Query: 1 DVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK 180
++I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+ ++
Sbjct: 15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74
Query: 181 IRKGTISIKSGV 216
++ T + +G+
Sbjct: 75 LKTSTAILSTGI 86
>AB018363-1|BAA33782.1| 85|Homo sapiens TRAD-d7 protein.
Length = 85
Score = 37.1 bits (82), Expect = 0.052
Identities = 15/55 (27%), Positives = 33/55 (60%)
Frame = +1
Query: 61 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKKH 225
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+ +H
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGIGRH 56
>AB018362-1|BAA33781.1| 85|Homo sapiens TRAD-d6 protein.
Length = 85
Score = 37.1 bits (82), Expect = 0.052
Identities = 15/55 (27%), Positives = 33/55 (60%)
Frame = +1
Query: 61 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKKH 225
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+ +H
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGIGRH 56
>AB018361-1|BAA33780.1| 68|Homo sapiens TRAD-d5 protein.
Length = 68
Score = 33.9 bits (74), Expect = 0.49
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 61 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 216
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGI 53
>AB018360-1|BAA33779.1| 95|Homo sapiens TRAD-d4 protein.
Length = 95
Score = 33.9 bits (74), Expect = 0.49
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 61 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 216
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGI 53
>BT007339-1|AAP36003.1| 134|Homo sapiens RAD51 homolog C (S.
cerevisiae) protein.
Length = 134
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>BC107753-1|AAI07754.1| 376|Homo sapiens RAD51 homolog C (S.
cerevisiae) protein.
Length = 376
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>BC101485-1|AAI01486.1| 134|Homo sapiens RAD51C protein protein.
Length = 134
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>BC093930-1|AAH93930.1| 134|Homo sapiens RAD51C protein protein.
Length = 134
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>BC000667-1|AAH00667.1| 134|Homo sapiens RAD51C protein protein.
Length = 134
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>AY623112-1|AAT38108.1| 376|Homo sapiens RAD51 homolog C (S.
cerevisiae) protein.
Length = 376
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>AF029670-1|AAC39605.1| 135|Homo sapiens Rad51C truncated protein
protein.
Length = 135
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>AF029669-1|AAC39604.1| 376|Homo sapiens Rad51C protein.
Length = 376
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 542 SSLDNMLNRGIPAKTITELCGIAGSGK 622
S+LD++L G+P TE+CG G GK
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGK 131
>AB065829-1|BAC06048.1| 313|Homo sapiens seven transmembrane helix
receptor protein.
Length = 313
Score = 30.7 bits (66), Expect = 4.5
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)
Frame = -2
Query: 527 FLLTCEVFYCYMIAIAAHSIVMAFCIPSNHNL*LHCKVTE--------MGRIMIIAHTG* 372
F L + CYM+ A+ +A C P + + + +V MG AHTG
Sbjct: 103 FFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSHQVCSMLTFAAYIMGLAGATAHTGC 162
Query: 371 QYALPQVEASLL------IFPLLVLQYLD*YKSQREVSTVPS*SLIITKCTKVIKCFFTP 210
+ L A+++ I PLL L Y ++ V V ++ + CT +I F
Sbjct: 163 MFRLTFCSANIINHYLCDILPLLQLSCTSTYVNEVVVLIVVGTNITVPSCTILISYVFIV 222
Query: 209 DLIL 198
IL
Sbjct: 223 TSIL 226
>AB065827-1|BAC06046.1| 313|Homo sapiens seven transmembrane helix
receptor protein.
Length = 313
Score = 29.9 bits (64), Expect = 7.9
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)
Frame = -2
Query: 527 FLLTCEVFYCYMIAIAAHSIVMAFCIPSNHNL*LHCKVTE--------MGRIMIIAHTG* 372
F L + CYM+ A+ +A C P + + + +V MG AHTG
Sbjct: 103 FFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSHQVCSMLTFAAYIMGLAGATAHTGC 162
Query: 371 QYALPQVEASLL------IFPLLVLQYLD*YKSQREVSTVPS*SLIITKCTKVIKCFFTP 210
L A+++ I PLL L Y ++ V V ++++ CT +I F
Sbjct: 163 MLRLTFCSANIINHYLCDILPLLQLSCTSTYVNEVVVLIVVGINIMVPSCTILISYVFIV 222
Query: 209 DLIL 198
IL
Sbjct: 223 TSIL 226
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,748,545
Number of Sequences: 237096
Number of extensions: 1792266
Number of successful extensions: 6787
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6783
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -