BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10e14f (636 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF039044-1|AAG24127.1| 272|Caenorhabditis elegans Hypothetical ... 29 3.7 Z71185-2|CAA94904.2| 522|Caenorhabditis elegans Hypothetical pr... 28 6.4 Z96047-3|CAB09412.1| 207|Caenorhabditis elegans Hypothetical pr... 27 8.5 >AF039044-1|AAG24127.1| 272|Caenorhabditis elegans Hypothetical protein F48G7.13 protein. Length = 272 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = -1 Query: 390 NCPYRLT-ICLTT-SRSKFINFSSTRITIFGL 301 NC Y++ +C + + SKF+NFS T+I F L Sbjct: 190 NCTYKMQKLCFNSRNSSKFLNFSKTKIINFFL 221 >Z71185-2|CAA94904.2| 522|Caenorhabditis elegans Hypothetical protein C35A5.2 protein. Length = 522 Score = 27.9 bits (59), Expect = 6.4 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 229 ITLVHFVIIKL*LGTVLTSRWLLY*SKYCNTSRGKI 336 I V F++I +G VLT +W+L K+C + KI Sbjct: 489 IVFVGFILITTTIGIVLTVKWIL---KFCFKQKQKI 521 >Z96047-3|CAB09412.1| 207|Caenorhabditis elegans Hypothetical protein DY3.3 protein. Length = 207 Score = 27.5 bits (58), Expect = 8.5 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 142 KTSLIFDSLLPKFVVCLVCICLTIFQHL 59 K SL++ L +C C C+ I QHL Sbjct: 171 KNSLLYLKLYHILKICTFCSCIIILQHL 198 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,468,693 Number of Sequences: 27780 Number of extensions: 300179 Number of successful extensions: 734 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 714 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 734 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1406256614 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -