Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14f
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical
           protein F48G7.13 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 390 NCPYRLT-ICLTT-SRSKFINFSSTRITIFGL 301
           NC Y++  +C  + + SKF+NFS T+I  F L
Sbjct: 190 NCTYKMQKLCFNSRNSSKFLNFSKTKIINFFL 221


>Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical
           protein C35A5.2 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 229 ITLVHFVIIKL*LGTVLTSRWLLY*SKYCNTSRGKI 336
           I  V F++I   +G VLT +W+L   K+C   + KI
Sbjct: 489 IVFVGFILITTTIGIVLTVKWIL---KFCFKQKQKI 521


>Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical
           protein DY3.3 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 142 KTSLIFDSLLPKFVVCLVCICLTIFQHL 59
           K SL++  L     +C  C C+ I QHL
Sbjct: 171 KNSLLYLKLYHILKICTFCSCIIILQHL 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,693
Number of Sequences: 27780
Number of extensions: 300179
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)