Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14f
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +2

Query: 278 LPLVGFCTSPNIVIRVEEKLINLLLLVVRHIVNLYGQLS*SCPFL*--LCNVTISYGLME 451
           L L+  C+      R+ + L++    +VR +VN+   L+         L +V +   +M 
Sbjct: 13  LVLISGCSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMT 72

Query: 452 YRMP*LWNEQQWQSYNNKKPHKSVG 526
                LW EQ W  Y  K   K  G
Sbjct: 73  TN---LWVEQSWYDYKLKWDPKEYG 94


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 75  VKHMQTKHTTNFGSK 119
           +KH+ T+H T  G K
Sbjct: 221 IKHINTRHNTKNGMK 235



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 393 DNCPYRLTICLTTSRSKFINFS-STRITIFGL 301
           + CPY +   +  + S FIN S    + ++G+
Sbjct: 560 EQCPYTVDAAIYGNISHFINHSCDPNLAVYGV 591


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 LEARNRILTKFSAPVINGSC 168
           +E RN  + + S P+I GSC
Sbjct: 164 MELRNFPMDRQSCPLILGSC 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,580
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)