Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e14f
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ...    35   0.052
At2g45280.1 68415.m05636 DNA repair family protein contains simi...    33   0.21 
At3g23680.1 68416.m02977 F-box family protein-related contains T...    29   2.0  
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing...    28   4.5  
At2g28560.1 68415.m03470 expressed protein                             27   7.9  

>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 857

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 479 QQWQSYNNKKPHKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGK 622
           +Q QS+     H  VG+E S+  L N L  G     +T +CG+ G GK
Sbjct: 151 EQRQSFPYVVEHNLVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGK 198


>At2g45280.1 68415.m05636 DNA repair family protein contains
           similarity to Swiss-Prot:O43502 DNA repair protein RAD51
           homolog 3 [Homo sapiens]
          Length = 363

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 536 SVSSLDNMLNRGIPAKTITELCGIAGSGK 622
           S S LDN+L  GI  + +TE+ G+ G GK
Sbjct: 108 SCSDLDNILGGGISCRDVTEIGGVPGIGK 136


>At3g23680.1 68416.m02977 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 235

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 148 PVINGSCFIDKIRKGTISIKSGVKKHFITLV 240
           P+INGS FID+ +K  I  + G  +H I ++
Sbjct: 139 PIINGSFFIDEEKKVAIGFEDG-NRHTINII 168


>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related weak similarity to tripartite motif
           protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
           [Homo sapiens] GI:899300; contains Pfam profiles
           PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 335

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 536 YTPFLLTCEVFYCYMIAIAAHSI 468
           + P  LTC   YCYM A +A S+
Sbjct: 239 FDPISLTCGHIYCYMCACSAASV 261


>At2g28560.1 68415.m03470 expressed protein 
          Length = 320

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 512 HKSVGMEYSVSSLDNMLNRGIPAKTITELCGIAGSGK 622
           H S  +   +  LD+ L  GIP   +TEL G  G GK
Sbjct: 48  HLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGK 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,842
Number of Sequences: 28952
Number of extensions: 263450
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)