Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e13r
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.41 
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   3.8  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   5.1  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    26   6.7  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   8.9  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 146 KSSCSSAFFVDFHESFLESSRDYNLVILNNARCWLLEYL*HPNL 277
           +SS +S  F DF   FL   RDY+L   N++ C L   +  P++
Sbjct: 231 RSSLNSKTFNDFRTLFLLLIRDYSLFHGNSSHCMLANSMLPPSI 274


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 731 LGGRTDSRTHKDSCQRRQN*PRHGRC 654
           L G+T  + H +SC  R++  RHG C
Sbjct: 49  LDGKTLEKQHCESCSIREDSSRHGIC 74


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 452 TESWLLIR*LYHLCTQFFVFSVKQRL 529
           TE WL  R  Y LC  F    VKQ+L
Sbjct: 108 TEIWLFCRLGYPLCALFNCLPVKQKL 133


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 631 QGHWHVPFNASETEEKDFHVDEKTTIK 551
           Q  WH P N    E++  H D+  TIK
Sbjct: 63  QCDWHEPANVYSIEQRRSHDDDLPTIK 89


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -2

Query: 571 DEKTTIKKPTMRLLQSLFYTENEELGAKMIELPYKEPGFRMVVVLPDKI 425
           DEK+  +    +L + L Y + EE+    + LP + P    +++ P+++
Sbjct: 38  DEKSGSESVLSQLNRVLMYLKGEEIPLISLNLPVQGPPTEELIIPPEEM 86


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 602 CVERNVPVPLEENDV 646
           CV RNVPV   +ND+
Sbjct: 537 CVSRNVPVQFSQNDM 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,289
Number of Sequences: 5004
Number of extensions: 60148
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)