Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e13f
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 58 4e-09
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 56 3e-08
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 42 5e-04
SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2) 29 2.4
SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1) 28 7.2
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 27 9.5
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) 27 9.5
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 58.4 bits (135), Expect = 4e-09
Identities = 33/155 (21%), Positives = 76/155 (49%), Gaps = 3/155 (1%)
Frame = +2
Query: 176 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG-GGEAQESSHTYGLLNQRYAEFDPKFL 352
N+ SP +++ L++ GA + ++ + + E H + L + D +
Sbjct: 29 NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDF-LQALNASNSDGNQI 87
Query: 353 TVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFGDPKNAA-DIINRWADEQTQGHIKT 526
+AN+++ +++ + F + + F +E+ +++ N A D +NRW +++T+ IK
Sbjct: 88 LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147
Query: 527 PVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETE 631
+ E + T + + N ++F+G W FN + T+
Sbjct: 148 LIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQ 182
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Frame = +2
Query: 206 LLLSLYESGAGAQSKEEIREILGGGEAQ--ESSHTYGLLNQRYAEFDPKF--LTVANKIY 373
+ L L G+ + +I I G E++ E+ T+ ++ D + + + NKI+
Sbjct: 3 MALGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIW 62
Query: 374 VSDQYKLADAFSR-TANLFRSEVDNINFGDPK-NAADIINRWADEQTQGHIKTPVSEDKI 547
D++++ + F T + SE+ ++F + +A +N W +QT+G+IK + I
Sbjct: 63 GHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVI 122
Query: 548 DPATAVAMFNVIFFQGHWHVPFNASET 628
+ T + + N ++F+G W F T
Sbjct: 123 NSLTRLIIVNAVYFKGVWKKEFGEENT 149
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/90 (20%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +2
Query: 350 LTVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFG-DPKNAADIINRWADEQTQGHIK 523
+++AN +++ + + F+ + +++ +++ D + A +N+W +E+T+ I
Sbjct: 50 MSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKIC 109
Query: 524 TPVSEDKIDPATAVAMFNVIFFQGHWHVPF 613
++ + T + + N I+F+G W PF
Sbjct: 110 DLIAPGVFNMLTRLTLVNAIYFKGMWDKPF 139
>SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)
Length = 157
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = -3
Query: 308 RMCVMTLEPPLPQGFP*SLPWTV-----HRLQTRTRKAAASRR-EETLSHS-CRQ 165
R+C+ T PPLP F ++P + H T R + SRR + ++ H CRQ
Sbjct: 81 RICLSTFSPPLPPTFSPTIPPIITSSNFHTTATDGRSSCRSRRGKPSVQHPFCRQ 135
>SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 461 PKNAADI--INRWADEQ-TQGHIKTPVSEDKIDPATAVAMFN 577
PK +A I + +W Q GH +TP S D + P A+ N
Sbjct: 1080 PKGSASIDRVRKWVSSQPVGGHTQTPPSYDYLRPLLGAALVN 1121
>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
Length = 354
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 175 ECDSVSSRRDAAAFLVRVWSRCTVQGRDQGNPWGR 279
E DSV + +D+ A W+R + + + NPW R
Sbjct: 262 EKDSVDTEKDSVATEKNPWTRRKIPWQRKKNPWTR 296
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 186 RLLSA*CCCFPCTSLE-PVHSPRKRSGKSLGEGRL 287
RLL++ CCC CT + +H +R K+ G ++
Sbjct: 561 RLLTSACCCKTCTRPKCAIHCSSRRQTKTSGNTKI 595
>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
Length = 253
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 257 IREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQY 388
I I GGGE E H G+L + FD F AN + +S +Y
Sbjct: 81 IANIRGGGEYGEDWHQAGMLGNKQNVFD-DFQAAANYL-ISHEY 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,168,711
Number of Sequences: 59808
Number of extensions: 468774
Number of successful extensions: 2248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2248
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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