Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e09r
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 33 0.058
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.54
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 0.95
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.7
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.9
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 26 6.7
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 6.7
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 26 6.7
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 8.9
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 32.7 bits (71), Expect = 0.058
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 14 RSLPGQRSQVRDAAVQGLLLLVRSDRLGHV 103
+ LP R +RDA+ Q LL+L +SD L +V
Sbjct: 99 KCLPSPRQSIRDASHQALLILAKSDALDYV 128
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.54
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = -2
Query: 394 DKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQ-GQELXIQAKKENVLLQLEAAYR 218
+K+ + E + E + Q K E ++ ++ E R + +E ++ ++E +L+ E R
Sbjct: 651 EKKQQELERQKREEK-QKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILE-ERKRR 708
Query: 217 ERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTK 92
E+L E +RR + E ERRL + + + N TK
Sbjct: 709 EKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTK 750
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 137 RPEAHGRLDSEQRDQGDHSGPGE-AGPGPLHRGPG 36
RP+ H D E R+ H PGE P P+H PG
Sbjct: 184 RPKHH-EFDDEDREFPAHHEPGEHMPPPPMHHKPG 217
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 349 NQTVKALEDAIEGEKTEQWRAQGQELXIQAKKENVLLQLE 230
N + + ED++ E+ E+ Q + L +Q + ENV ++LE
Sbjct: 785 NTAILSFEDSLRRERDEKSTLQQKCLNLQYEYENVRIELE 824
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 391 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELXIQAKKEN 248
K E E EWN+ +N+ E+A+E E T Q Q+L + +EN
Sbjct: 85 KNKELIEEEWNDFQNEIGIIEENAVEQEIT----LQQQQLLAEKDEEN 128
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.9
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Frame = -2
Query: 403 AWLDKEVEATENEWNEGRNQTVKALEDAIEG-----EKTEQWRAQGQEL--XIQAKKENV 245
A LD E+E + + E RN+T ++E A E EK +Q + L +QA +E +
Sbjct: 913 AELDNEIERLQMQIAEWRNRTGVSVEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEETL 972
Query: 244 LLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKA 89
+ E + R + K + L + N +L KH +++ V A
Sbjct: 973 RRRNEMWTKFRKLITL-RTKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPA 1023
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 428 VSHIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHT 529
VS + D Q QS V LHY + + + C +HT
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 532 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEW 362
+GVG+A+ + +Y+ E LV++YV + G +A +D E N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 685 RLVLCTRSVCSHLNAKPRATTL 750
+L+LCTRS+ +HL+ + +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 385 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQEL 272
V+ T + +E QTV+ L +IEG W A ++L
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAPQRQL 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,884
Number of Sequences: 5004
Number of extensions: 57154
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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