Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e09r
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu... 32 0.36
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 32 0.36
At4g01985.1 68417.m00265 expressed protein 31 0.63
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 31 1.1
At3g24120.2 68416.m03029 myb family transcription factor contain... 30 1.5
At2g23270.1 68415.m02779 expressed protein ; similar to GP|24648... 30 1.5
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 2.5
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 2.5
At1g52080.1 68414.m05875 actin binding protein family contains P... 29 4.4
At1g32730.1 68414.m04036 expressed protein 29 4.4
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 5.9
At5g06830.1 68418.m00772 expressed protein contains Pfam profile... 28 5.9
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 5.9
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 28 5.9
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 28 5.9
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 28 5.9
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 7.7
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 7.7
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p... 28 7.7
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p... 28 7.7
At1g76010.1 68414.m08825 expressed protein 28 7.7
>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein XTR4
GI:1244754 from [Arabidopsis thaliana]
Length = 357
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 598 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 473
GFI +Q FF S + G YT G+ +A Y + +++V +H+
Sbjct: 73 GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = -2
Query: 331 LEDAIEGEKTEQWRAQGQELXIQAKKENVLLQLEAAYRERLM--YAYSEVKRRLDYQLEK 158
L++ E EK Q A+ + +AK+E +EAAY+ RL+ + E +++ + +L K
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730
Query: 157 SNVERRLAQKHMVDWIVSN 101
E L +K+ + ++ N
Sbjct: 731 ERHESDLKEKNRLSRMLGN 749
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 31.5 bits (68), Expect = 0.63
Identities = 30/107 (28%), Positives = 36/107 (33%)
Frame = -1
Query: 329 GGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 150
GG+ RGR+ G A G G G G G + G A+ G+ R
Sbjct: 104 GGKGRGRKGGGGAGGGVGGGVGAGGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGR 163
Query: 149 GAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVNGS 9
G S A G + G G AG G G G G GS
Sbjct: 164 GGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSGGGGTVGAGGRGS 210
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 341 RESTGGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEA 210
R GG RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At3g24120.2 68416.m03029 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -2
Query: 355 GRNQTVKALEDAIEGEKTEQWRAQGQELXIQAKKENVLLQLEAAYRERLMYAYSEVKRRL 176
G+ T + + + GE + + + + +++N Q+ A R ++ EV+RRL
Sbjct: 100 GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQM-----EVQRRL 154
Query: 175 DYQLEKSNVERRL 137
QLE V+RRL
Sbjct: 155 HDQLEYGQVQRRL 167
>At2g23270.1 68415.m02779 expressed protein ; similar to
GP|2464853|gnl|PID|e353149|Z99707
Length = 86
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 155 ERGAPSRPEAHGRLD-SEQRDQGDHSGPGEAGPG 57
E G S E H +D +E + G HSGP +GPG
Sbjct: 52 ESGPSSGGEGHRFVDRTETLEYGKHSGPSTSGPG 85
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 179 SGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPG 36
SG+P + G P G L + G GP GP P GPG
Sbjct: 185 SGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLSNGPPPPMMGPG 232
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 29.5 bits (63), Expect = 2.5
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = -2
Query: 388 EVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELXIQAKKENVLLQLEAAYRERL 209
EV+A ++ E + +K +EDA+ + R + +QA KEN L+L+ A +
Sbjct: 865 EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKAVADA- 922
Query: 208 MYAYSEVKRRLDYQL-EKSNVERRLAQ-KHMVDWIVSNVTKA----ITPDQEKQALDR 53
S V LD L KS +E L Q + + I+S +A T + E++ L +
Sbjct: 923 ----SSVASELDEVLATKSTLEAALMQAERNISDIISEKEEAQGRTATAEMEQEMLQK 976
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = -2
Query: 331 LEDAIEGEKTEQWRAQGQELXIQA-KKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKS 155
+E + K ++ +A+ ++L + + VLL+L+ A + +K++L+ ++
Sbjct: 187 METKVFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQ-----VQVLKKKLNINTQQ- 240
Query: 154 NVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIADLASLARK*TEAN 5
+V + L+ K V + KA+ PD E + + + DL S + T+ N
Sbjct: 241 HVAQILSLKQRVARLQEEEIKAVLPDLEADKMMQRLRDLESEINELTDTN 290
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -2
Query: 412 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELXIQAKKENVLLQL 233
KL + D+ +E ENE + V LE+A + G Q K+EN++ +L
Sbjct: 137 KLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSEL 195
Query: 232 EAAYRERLMYAYSEVKR 182
+ R S KR
Sbjct: 196 KLRLRSNSARTESFKKR 212
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = -1
Query: 341 RESTGGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAR 162
R+ GG +G E G R + + S +GE + + E H R R + R
Sbjct: 36 RKREGGERQGEEGGEEERVSSRSKKSRGDGEENGGGKRDRERERH-RSSRDKDRERDKVR 94
Query: 161 EVERGAPSRPEAHGRLDSEQRDQGDHSGP 75
E R S E S++RD+ D P
Sbjct: 95 EGSRDKESDRER----SSKERDRSDRDKP 119
>At5g06830.1 68418.m00772 expressed protein contains Pfam profile:
PF05600 protein of unknown function (DUF773)
Length = 549
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = -2
Query: 388 EVEATENEWNEG-RNQTVKALEDA--IEGEKTEQWRAQGQELXIQAKKENVLLQLEAAYR 218
EV+ +E W+ V+ + D+ +E +T+ + Q L ++ +L E YR
Sbjct: 327 EVDVSEISWDVSVETPQVEEIGDSALLESNQTQLTDSTTQVLGSGGERSQLL---ETEYR 383
Query: 217 ERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPD 77
+++ EVK L+ +L + E L+ +H V + V + +P+
Sbjct: 384 NKILDDLYEVKAFLNQRLIELRNEDTLSLQHHVQAVSPMVLQQYSPE 430
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 28.3 bits (60), Expect = 5.9
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = -2
Query: 391 KEVEATENEWNEGRNQTVKALEDAIE--GEKTEQWRAQGQELXIQAKKENVLLQLEAAYR 218
++ E ++E ++ K LE+A E G++T Q + + +KE +Q+ Y
Sbjct: 1469 RKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK-RIQILDKYV 1527
Query: 217 ERL---MYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCI 47
+L + +E ++ D +L K ER+ +K + D + + D+E L+R
Sbjct: 1528 HQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQ 1587
Query: 46 ADLASLARK 20
L L+ +
Sbjct: 1588 TALTHLSEE 1596
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 341 RESTGGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEA 210
R G RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGESGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 341 RESTGGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEA 210
R G RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGESGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 341 RESTGGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEA 210
R G RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGESGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 146 APSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAG 27
APS E + + SE R+ G +G P P H P + G
Sbjct: 155 APSNIEMNHQYGSEFRNGGQFNGVAPLPPPPPHHPPPYGG 194
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 146 APSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAG 27
APS E + + SE R+ G +G P P H P + G
Sbjct: 155 APSNIEMNHQYGSEFRNGGQFNGVAPLPPPPPHHPPPYGG 194
>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 385
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -1
Query: 335 STGGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREV 156
STG RG ED A A S G+RAP R +G + VR EV
Sbjct: 174 STGDMTRGSEDTARRPPSVKASLSVSFGQRAP-HRASTRGSSPVRRPPPTGYDRNGGDEV 232
Query: 155 ERGAPSRPEAHGRLDSEQRDQ 93
++ +P R ++ D+
Sbjct: 233 QQRSPRRSQSRDYYSDRDSDR 253
>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 393
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -1
Query: 335 STGGRNRGREDGAVARAGTGAXHSGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREV 156
STG RG ED A A S G+RAP R +G + VR EV
Sbjct: 182 STGDMTRGSEDTARRPPSVKASLSVSFGQRAP-HRASTRGSSPVRRPPPTGYDRNGGDEV 240
Query: 155 ERGAPSRPEAHGRLDSEQRDQ 93
++ +P R ++ D+
Sbjct: 241 QQRSPRRSQSRDYYSDRDSDR 261
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 7.7
Identities = 37/118 (31%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Frame = -1
Query: 335 STGGRNRGREDG---AVARAGTGAXHSGQEGERAPAAR----GRLQGEAHVRLLRGEAAS 177
S GGR RGR G R G G + E E R GR +G R RG
Sbjct: 147 SPGGRGRGRGRGRGRGRGRGGRGNAYVNVEHEDGGWEREQSYGRGRGRGRGRSSRGRGRG 206
Query: 176 GLPAREVERGAPSRPEAHGRLDSEQR---DQGDHSGP--GEAG-PGPLHRGPGFAGQE 21
G E AP E R D+G + P G G GP RG G+ G +
Sbjct: 207 GYNGPPNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRG-GYDGPQ 263
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,811
Number of Sequences: 28952
Number of extensions: 330118
Number of successful extensions: 1208
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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