Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e09f
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   3.1  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   3.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    24   9.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   9.4  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    24   9.4  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    24   9.4  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   9.4  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 393 VSHIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHT 292
           VS +  D Q QS V   LHY + + +   C +HT
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 136 RLVLCTRSVCSHLNAKPRATTL 71
           +L+LCTRS+ +HL+ +   +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 73   MLSRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEP 207
            +L    L  GA ++T      A   A  +A  D ++ ARP RG P
Sbjct: 984  LLQEEPLGRGARRRTPVVYDEAVRDAQWMAEMDMESEARPTRGRP 1028


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 140 GAPPPM*QHTTRKPLLAL*GVSQA 211
           GA PP  + +T KPLL++  +S +
Sbjct: 213 GAKPPFPRESTEKPLLSVSALSSS 236


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 339 HYIDFLAAQVCCQTHTKSVRTRHTSFRVEELEP 241
           H++D     +  +T T++++TR   F +E L P
Sbjct: 59  HFVDVTDRFLLPETETQNLKTRLGIFELEPLPP 91


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 118 RSVCSH--LNAKPRATTLFIVYFISYFQNAKIA 26
           RSVC    LN KP +  LF  YF   ++  + A
Sbjct: 125 RSVCERIQLNGKPISQELFTKYFFDVWERLENA 157


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 72  NVVARGFAFRCEQTDRVHSTSRTG 143
           N  + GF+F    TD   STS+TG
Sbjct: 366 NQTSSGFSFGKPATDTTTSTSKTG 389


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 131 SAVHAVCLLAPERKA----TRDNIIYRIFYKLFPK 39
           SA+ A+CL APE+ A    T   + Y +F  +  K
Sbjct: 176 SAIKALCLEAPEQAAQLFETNPQLSYAVFQAMLMK 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,278
Number of Sequences: 5004
Number of extensions: 39933
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)