Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e09f
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 29 1.8
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40) 29 2.3
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 28 4.1
SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62) 28 4.1
SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_16237| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_4925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_33114| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_17195| Best HMM Match : Trypsin (HMM E-Value=4.9e-06) 27 9.5
>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 348 FVLHYIDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFA 208
+VL+ IDF A C HT + H +F+VE F R KS F+
Sbjct: 21 YVLNSIDFEA----CDKHTIGIAYAHAAFKVEAATKFTREPLKSGFS 63
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +3
Query: 69 NNVVARGFAFRCEQTDRVHSTSRTGLRLRCSNTRPENLCSPCKG*ARQS*TWLYS*RMVP 248
+ + G+ R + ++ G+R +C N ++C C+ R + T + +P
Sbjct: 98 DQAIKEGYIHRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNSTHAFIKIRIP 157
Query: 249 ILPLEN 266
I PL N
Sbjct: 158 IPPLAN 163
>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
Length = 444
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+RC TD H T T +R T P+ LC+
Sbjct: 2 YRCHTTDCAHCTDFTRQTVRTVQTPPDRLCA 32
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T LR T P+ LC+
Sbjct: 194 YRHHQTDCAHCTDFTRQTLRIVQTPPDRLCA 224
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 290 YRHHQTDCAHCTDTTRQTVRTVQTPPDRLCA 320
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 322 YRLHQTDCAHCTDFTRQTVRIVQTPPDRLCA 352
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 354 YRHHQTDCAHCTDTTRQTVRIVQTPPDRLCA 384
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 34 YRHHQTDCAHCTDFTRQTVRTVQTSPDRLCA 64
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 66 YRHHQTDCAHCTDLTRQTVRTVQTPPDRLCA 96
>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
Length = 351
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 416 ANFGPNFT*ATYTMTSSDSPE*YS 345
ANFGP FT T+T TS D+ E +S
Sbjct: 89 ANFGPGFT--TFTYTSGDARETFS 110
>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
Length = 524
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 54 IKYTINNVVARGFA-FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
I YT+ R A +R QTD H T T +R T P+ LC+
Sbjct: 14 IVYTVQTSPDRLCALYRHHQTDCAHCTVTTRQTVRTVQTPPDRLCA 59
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 349 YRHHQTDCAHCTVTTRQTVRTVQTSPDRLCA 379
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 381 YRFHQTDCAHCTVTTRQTVRSVQTPPDRLCA 411
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T +R T P+ LC+
Sbjct: 61 YRHHQTDCAHCTVTTRQTVRTVQTPPDRLCA 91
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 96 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
+R QTD H T T R T P+ LC+
Sbjct: 253 YRHHQTDCAHCTDTTRQTARTVQTPPDRLCA 283
>SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62)
Length = 116
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 157 HRRRSPVRLVLCT--RSVCSHLNAKPRATTLFIVYF 56
HRRR P ++L + R C+ +N+K AT L +Y+
Sbjct: 58 HRRRRPAAILLQSYWRMYCADINSKSVATWLPHIYY 93
>SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 835
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 294 TKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKGFLVVCCY 157
TK + H+ R + PFF ++ K + W T A+ G++V Y
Sbjct: 149 TKEINNMHSELR--KSIPFFSSRYKGHGIWDTLMAANLGYMVAFMY 192
>SB_16237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 280 PYTFGVGLATYLCSXEIYVMEHEYYSGLSLLV 375
PY G + T +C ++YV +HE L+LL+
Sbjct: 26 PYPLGHAIITMVCKTKLYV-DHEGTRTLNLLI 56
>SB_4925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 280 PYTFGVGLATYLCSXEIYVMEHEYYSGLSLLV 375
PY G + T +C ++YV +HE L+LL+
Sbjct: 26 PYPLGHAIITMVCKTKLYV-DHEGTRTLNLLI 56
>SB_33114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 280 PYTFGVGLATYLCSXEIYVMEHEYYSGLSLLV 375
PY G + T +C ++YV +HE L+LL+
Sbjct: 26 PYPLGHAIITMVCKMKLYV-DHEGTRTLNLLI 56
>SB_17195| Best HMM Match : Trypsin (HMM E-Value=4.9e-06)
Length = 379
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -3
Query: 336 YIDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 178
Y F+A + C+ +R H R + + R+ + F+W+ SKG
Sbjct: 2 YRVFVAVLLLCEAIGAPLRHYHRQGRSSASDTWIRDASDITFSWIPDLEPSKG 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,701
Number of Sequences: 59808
Number of extensions: 339573
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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