Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e08r
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.61 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.9  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 576 RCDADDDHRVTLAEWGKCLELDELEMEERCDDFNENAEHYL 454
           R D D   R+     GK L+ D++  ++R DD   N  H++
Sbjct: 178 RDDTDMHGRIKSERNGKDLDDDDMNDDDRKDDLLGNNMHHI 218


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 532 GQVPRTRRVGNGGA 491
           G+ PRTRRV   GA
Sbjct: 206 GRSPRTRRVKKPGA 219


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 525  CLELDELEMEERCDDFNENAEHYL 454
            C  +DE+EM    + F+ N  H+L
Sbjct: 1405 CDFVDEIEMFSMFERFHVNKLHFL 1428


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,837
Number of Sequences: 336
Number of extensions: 2816
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)