Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e08r
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53...    29   2.8  
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002...    29   3.7  
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    28   8.5  

>05_01_0079 +
           531617-531734,531987-532059,532152-532261,532400-532543,
           532628-532736,532836-533182,533260-533333,533478-533782,
           534168-534294,534385-534414,534589-534837
          Length = 561

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 606 LEHCIAPFLDRCDADDDHRVTLA--EWGKCLELD 511
           L H +  FL  CD+ D H   L+  EW   L+LD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355


>07_03_1153 +
           24398122-24398747,24399326-24399542,24399741-24400220,
           24400801-24401007,24401112-24401249,24401317-24401538
          Length = 629

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 594 IAPFLDRCDADDDHRVTLAEWGKCLELDELEMEERCDDFNENAEHYL 454
           +A  +++C A D ++V    W  C+E+ E   E         A  YL
Sbjct: 273 LASVIEKCKATDQNKVLCPPWSWCVEIAEAAFEANNSKLGLFALEYL 319


>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 527 LPHSARVTRWSSSASQRSRNGAMQCSRAISGA 622
           LP S +V RWSSSA+  +R  A    R +  A
Sbjct: 15  LPASLQVGRWSSSAAMSARPVAFSLRRPVLAA 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,363
Number of Sequences: 37544
Number of extensions: 266703
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)