Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e08f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 32 0.32
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 30 1.3
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 3.0
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 3.0
03_02_0520 + 9092020-9092079,9092253-9093047 29 4.0
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 5.2
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 5.2
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 6.9
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 6.9
06_01_0985 - 7646772-7647451,7647957-7648107 28 6.9
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 6.9
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 28 6.9
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 27 9.2
05_01_0185 + 1305006-1305218 27 9.2
05_01_0181 - 1280296-1280508 27 9.2
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 27 9.2
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258... 27 9.2
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 190 LRRWTFSSRGADPAVPTPHTTSVGGANDRDHEGQRKKTLHLAFR*CVSM*SRRQSRRKP 14
LR+ T S+ A PA+P+ TS + DH G +K L + ++ + Q + KP
Sbjct: 950 LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSKP 1008
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -1
Query: 322 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 149
F+ D + SG+ + LM+ ALR +V F L R W FS G P
Sbjct: 9 FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68
Query: 148 VPTP 137
+P
Sbjct: 69 QSSP 72
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 432 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 533
+R P QTPDA A + T+P ++ +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 365 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 499
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 235 VLDVFSLRDVPAAELLRRWTFSSR 164
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 351 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 494
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 298 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 164
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 421 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 278
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 286 GYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 164
G F L AL+ VLD+ +++ +P+ +L+RWT +R
Sbjct: 484 GMFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 235 VLDVFSLRDVPAAELLRRWTFSSR 164
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 258 SSKLSDIPCSMCSASEMSPRPSCSDVG 178
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = -1
Query: 595 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 416
++ LN+ + +I V+E A Y + PG +E+ ASG +
Sbjct: 140 ILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 199
Query: 415 VSVFVDFADTSCAAVDFQARVFH 347
V+ VD S + V F + + +
Sbjct: 200 VAYVVD-TPRSTSPVTFMSNMLY 221
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 235 VLDVFSLRDVPAAELLRRWTFSSR 164
+LDV +++ VP +L+RWT ++
Sbjct: 319 ILDVNNIKSVPQQYILKRWTIDAK 342
>05_01_0185 + 1305006-1305218
Length = 70
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 163 GADPAVPTPHTTSVGGAND 107
GADP V +PH GG D
Sbjct: 3 GADPTVSSPHARGFGGGGD 21
>05_01_0181 - 1280296-1280508
Length = 70
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 163 GADPAVPTPHTTSVGGAND 107
GADP V +PH GG D
Sbjct: 3 GADPTVSSPHARGFGGGGD 21
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -1
Query: 235 VLDVFSLRDVPAAELLRRWTFSSR 164
+LDV +++++P +L+RWT ++
Sbjct: 365 ILDVNNIKEIPKQYILQRWTIDAK 388
>01_01_0321 -
2584332-2584661,2584776-2584883,2584987-2585070,
2585162-2585221,2585322-2585421,2585504-2585906,
2586183-2586480,2587526-2587711
Length = 522
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 244 RHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHTTSVGGANDRDHE 95
RHS+ + R++ AELL R G+D A+ SVG + + E
Sbjct: 117 RHSICSLGGRRELQGAELLPR--LPCPGSDEALECESKASVGSVSSKGEE 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,176
Number of Sequences: 37544
Number of extensions: 346551
Number of successful extensions: 1045
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -