Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07r
         (768 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    42   0.022
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   1.5  
UniRef50_A7TI94 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  
UniRef50_Q0S6D6 Cluster: Possible protocatechuate dioxygenase; n...    34   4.5  
UniRef50_P38299 Cluster: Uncharacterized protein YBR184W; n=2; S...    33   5.9  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.5 bits (93), Expect = 0.022
 Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 533 MGDGNHSPSGGPYAPLPRKA-IKKNSLLAQLINPRLLFF 420
           MGDGNHSPSG PYA LP +A +K  SL   +I    L F
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMKLTSLFIFVIVALSLLF 39


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = -1

Query: 579  ASRQRLGSALGIAEVHGRR 523
            + RQRLGSA GIAEVHGRR
Sbjct: 968  SGRQRLGSAPGIAEVHGRR 986


>UniRef50_A7TI94 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 938

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
 Frame = -2

Query: 563 LALPLALL-KSMGDGNHSPSGGPYAPLPRKAIKKNSLLAQLINPRLLFFVYLIAN-SLDR 390
           L L LALL KS+G+GNH      Y+ + RK I  N L   +I       V +    SL+ 
Sbjct: 522 LKLMLALLNKSLGEGNHGDRINDYSNI-RKTIDVN-LFEYMIKDEDPINVEMFPKVSLEE 579

Query: 389 ALSATHGWYVNLHSSTCVLTAKFLTFSTA*TLTKICMDLERLCTFAARGA--LPTAYCNS 216
            L  T   + N +    +L AK   ++ +  L K   + + L +F +     LPT Y   
Sbjct: 580 ILKITEQEHENNYELLELLYAKLKKYTHSILLIKKTGNSDDLLSFLSNNLDNLPTEY--- 636

Query: 215 NCIKVIFDYVYGSRKPE 165
             I +I D +Y    PE
Sbjct: 637 KSISMINDILYILESPE 653


>UniRef50_Q0S6D6 Cluster: Possible protocatechuate dioxygenase; n=1;
           Rhodococcus sp. RHA1|Rep: Possible protocatechuate
           dioxygenase - Rhodococcus sp. (strain RHA1)
          Length = 322

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 641 HCETGSIKSGH*LGSSSRVKPLVGSGLALPLALLKSMGDGNHSPSGGPYAP 489
           HC+ G + SG    S SR   L G+G       +   G G   P+GGP  P
Sbjct: 133 HCDAGGVYSG--FESGSRAADLSGNGAPAGAPPVGGPGGGGQLPAGGPGGP 181


>UniRef50_P38299 Cluster: Uncharacterized protein YBR184W; n=2;
           Saccharomyces cerevisiae|Rep: Uncharacterized protein
           YBR184W - Saccharomyces cerevisiae (Baker's yeast)
          Length = 523

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 FSLLRQVYKVFTPVFANRRHNQKSLLCSYCCS 226
           F+LLR +Y  FT + +N R++ K     YC S
Sbjct: 343 FTLLRDIYSGFTIILSNHRYHPKGFSADYCYS 374


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,253,876
Number of Sequences: 1657284
Number of extensions: 14580935
Number of successful extensions: 30749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30743
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)