Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07r
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    28   7.1  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     28   9.4  
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322...    28   9.4  
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315     28   9.4  

>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 535 PWATVTTHHQVGRMLLCLERQ*KKTPF 455
           PW++VT HH  G+++L +E   +K  F
Sbjct: 904 PWSSVTKHHFKGKVVLIMEILIRKCGF 930


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 569 SGLALPLALLKSMGDGNHSPSGGPYAPLPRKAIKKNSLLAQLINPRLL 426
           S L  PLA   +      SPSGG    LP+ +++K SL   ++ P ++
Sbjct: 114 SSLQTPLAPAAAAATSPASPSGGS---LPQNSLRKQSLGKVVVQPSII 158


>09_03_0096 +
           12328116-12329561,12329810-12329852,12332119-12332237,
           12333326-12333853
          Length = 711

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 137 LLRQVYKVFTPVFANRRHNQKSLLCSYCCSMRLEER 244
           LL+  ++V   V  N+RH +K +    CC+ ++EER
Sbjct: 668 LLQCAHQVLC-VGCNKRHEEKGVARCPCCNAKVEER 702


>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
          Length = 678

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -2

Query: 632 TGSIKSGH*LGSSSRVKPLVGSGLALPLALLKSMGDGNHSPSGGPYAPLPRK--AIKKNS 459
           T  ++SG  LG           GLA P  +  ++G G H  SGG  + + RK      N 
Sbjct: 145 TAWVESGASLGELYYTVAKSNPGLAFPAGVCPTIGVGGHL-SGGGISMMSRKYGLAADNI 203

Query: 458 LLAQLIN 438
           L A+L+N
Sbjct: 204 LDAKLVN 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,376
Number of Sequences: 37544
Number of extensions: 397564
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)