Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07r
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  30   1.8  
SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)                       29   5.5  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_27997| Best HMM Match : OTU (HMM E-Value=1.6)                       28   7.2  

>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 569 SGLALPLALLKSMGDGNHSPSGGP-YAPLPR 480
           SG+  PLA   S  D  H P GGP Y+P  R
Sbjct: 33  SGIFSPLASSTSASDSRHRPVGGPAYSPTER 63


>SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)
          Length = 263

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 140 LRQVYKVFTPVFANRR-HNQKSLLCSYC 220
           + ++Y +F  +F ++R HN+K+  CS C
Sbjct: 134 ITEIYSIFVKIFFHKRNHNRKAYGCSKC 161


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 380 LKEPYRGY*RLGKQKREAEDLLAAPKG 460
           ++E  RGY R+ K KRE+E +  +PKG
Sbjct: 373 VRESPRGYERVRKGKRESERVRESPKG 399


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 26/114 (22%), Positives = 45/114 (39%)
 Frame = -2

Query: 515 SPSGGPYAPLPRKAIKKNSLLAQLINPRLLFFVYLIANSLDRALSATHGWYVNLHSSTCV 336
           +P G  YAP+P + +       +L   R+ FF   +  ++  A    H   V+  S  CV
Sbjct: 187 APDGKTYAPIPSRFLSTYIPGLELEGIRIFFFTVRLRCTV-CACRYVHSVCVSFRSQ-CV 244

Query: 335 LTAKFLTFSTA*TLTKICMDLERLCTFAARGALPTAYCNSNCIKVIFDYVYGSR 174
                 T      +  +C+ L   C       +  + C + C++V+   V  SR
Sbjct: 245 RVV-MCTVCACRYVHSVCVSLRSQCVRVIMYTVCVSLC-AQCMRVVMCTVCASR 296


>SB_27997| Best HMM Match : OTU (HMM E-Value=1.6)
          Length = 226

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 140 LRQVYKVFTPVFANRR-HNQKSLLCSYC 220
           + ++Y +F  +F ++R HN+K   CS C
Sbjct: 134 ITEIYSIFVKIFFHKRNHNRKDYGCSKC 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,940,605
Number of Sequences: 59808
Number of extensions: 461492
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)