Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07r
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family ...    31   1.2  
U10414-8|AAA19076.1|  272|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82078-3|CAB04942.1|  313|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    28   6.4  
Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family of
           potassium channelsprotein 37 protein.
          Length = 350

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 221 NSNCIKVIFDYVYGSRKPE*ILYILA*VKKSVFCSTIL 108
           N+NCIK IFD +Y S  P+ I   L  +   + C T +
Sbjct: 126 NNNCIKEIFDLLYASNPPKHIEEFLDGLAYVITCITTI 163


>U10414-8|AAA19076.1|  272|Caenorhabditis elegans Hypothetical
           protein F42A10.5 protein.
          Length = 272

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -2

Query: 602 GSSSRVKPLVGSGLALPLALLKSMGDGNHSPSGGPYAPLPRKAIKKNS 459
           GSS       GSG    LA LK M   N +P+    AP P  A   +S
Sbjct: 208 GSSRSYPTTAGSGRDSALAALKMMSAANPAPARNEPAPAPAAAAPASS 255


>Z82078-3|CAB04942.1|  313|Caenorhabditis elegans Hypothetical
           protein W09D6.2 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 227 YCNSNCIKVIFDYVYGSRKPE 165
           YCN +C + I DY+Y    PE
Sbjct: 282 YCNVSCAEPIADYIYREELPE 302


>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 683 YLYEFSFGWFVAYHHCETGS-IKSGH*LGSSSRVKPLVGSGLALPLALLKSMGDGNHSP 510
           ++ +F F + V Y  C+ GS +++G     + +V  ++G   A  L L+  + +    P
Sbjct: 70  FVKDFDFEYIVDYTECDLGSVVRAGMEFIKTHKVDVIIGPPCAQALRLMSFLAENYKKP 128


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 683 YLYEFSFGWFVAYHHCETGS-IKSGH*LGSSSRVKPLVGSGLALPLALLKSMGDGNHSP 510
           ++ +F F + V Y  C+ GS +++G     + +V  ++G   A  L L+  + +    P
Sbjct: 70  FVKDFDFEYIVDYTECDLGSVVRAGMEFIKTHKVDVIIGPPCAQALRLMSFLAENYKKP 128


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 63  IIKNERGPPGNREPIQYCTTKHTFLYLGKYIKYLLRFSRTVDIIKNH 203
           IIK +R P G  E  +   T+H FL LGK     L++    DI+K++
Sbjct: 352 IIKLKRKPMGRVE--KSIETRHGFLPLGKAPIRFLKYLAVEDILKHY 396


>Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical
           protein R134.2 protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 683 YLYEFSFGWFVAYHHCETGS-IKSGH*LGSSSRVKPLVGSGLALPLALLKSMGDGNHSP 510
           Y+ +F F + V Y  C+ GS +++G     + +V  ++G   A  L ++  + +    P
Sbjct: 73  YVKDFDFEFIVDYTECDQGSVVRAGIEFIKTHKVDVIIGPPCAQALRVMSFLAENYKKP 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,757
Number of Sequences: 27780
Number of extensions: 356201
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)