Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07r
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 502 PPDGEWLPSPMDFSNAKG 555
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +1

Query: 241 APLAANVHKRSKSIQILVNVYAVENVKNFAVSTQVELCKFTYQPCVAERALSRL 402
           +P   + HK + ++ +++ V+ +  V  F V+     CK     C++ RA   L
Sbjct: 261 SPYHVSDHKAAITVGVIMGVFLICWVPFFCVNIVTSYCK----TCISGRAFQVL 310


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 259 VHKRSKSIQILVNVYAVENVKNFAVSTQVE 348
           VH+   +  +LVN   V  + +F +S ++E
Sbjct: 757 VHRDLAARNVLVNAALVCKIADFGLSREIE 786


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 521 YRRPWTSAMPRAEPSR 568
           Y+RP T+  PRA  SR
Sbjct: 159 YKRPRTTFEPRATDSR 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,030
Number of Sequences: 438
Number of extensions: 4347
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)