Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07r
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    30   2.0  
At4g27300.1 68417.m03917 S-locus protein kinase, putative simila...    29   3.4  
At3g46970.1 68416.m05100 starch phosphorylase, putative similar ...    29   4.5  

>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           th., PATX:G2160756
          Length = 992

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 349 LCKFTYQPCVAERALSRLLAIR*TKKRSRGFISCAKREFFFIAFLG 486
           LC F+  PC   +  S+   +     RSRG IS   + FF +  LG
Sbjct: 622 LCGFSSNPCNGSQNQSQSQLLNQNNARSRGEISAKFKLFFGLGLLG 667


>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 815

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 433 RGFISCAKREFFFIAFLGRGAYGP 504
           R  IS A  +F ++ FLGRG +GP
Sbjct: 490 RKTISIATDDFSYVNFLGRGGFGP 513


>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
           alpha-glucan phosphorylase, H isozyme SP:P32811 from
           [Solanum tuberosum]
          Length = 841

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 217 LLQYAVGRAPLAANVHKRSKSI-QILVNVYAVENVKNFAVSTQVELCKFTYQPCVA 381
           L Q+  G   LAA +H R++ I  +L    A EN K   +  Q  LC  + Q  ++
Sbjct: 259 LFQFNEGEYELAAQLHSRAQQICTVLYPGDATENGKLLRLKQQFFLCSASLQDIIS 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,900
Number of Sequences: 28952
Number of extensions: 321017
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)