Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07f
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    29   0.72 
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   3.8  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   5.1  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   5.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   6.7  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   8.8  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   8.8  

>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 446 ARRPTFPERLRSREPIAETIEETSKGTIKLLSIL 345
           AR+P   ++ +   P+AE +E+T+ G  K+L  L
Sbjct: 56  ARKPKLDKKAKIASPVAEYVEKTTPGEKKVLQDL 89


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 220 LTILTVVGVAAGTLLGCGLRASGHQWSKRDVM 315
           ++ L  +G+  G  +GCG+      W  R V+
Sbjct: 407 VSALPYIGILVGVFIGCGINCLFEPWYFRQVI 438


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 415 LSLSGKVGLRAIIYYMTTTVCAVMLGIAL-VTTIKPGSNS 531
           L  S   G+RA +++++T +C   LG+ +   T+  G+++
Sbjct: 330 LDHSNHHGVRAGVFFISTGLCLAQLGVNIAANTVSAGNDT 369


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 211 ENLLTILTVVGVAAGTLLGCGLRAS 285
           E+ +T + VVG   G L+ C LRA+
Sbjct: 342 ESSVTRIAVVGAGRGPLVDCALRAA 366


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 340 FLRMLKSLIVPLLVSSIVSAIGSLDL 417
           FL++L SL   L VSS  S + SL+L
Sbjct: 159 FLKLLMSLSAKLAVSSNSSTVSSLEL 184


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 349 MLKSLIVPLLVSSIVSAIGSLD--LSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG 522
           M+K      +V ++ + IG      S + K+G+     YM   +CA++   A V   K  
Sbjct: 191 MMKFASFERIVEALYTYIGKPKNMYSKAEKIGISFAGGYMAGVLCAIISHPADVMVSKLN 250

Query: 523 SNSKGNE 543
           SN K  E
Sbjct: 251 SNKKAGE 257


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 36  CVSR--SKYKIESNDNSDAVLNALNRVVCDKVVLFLILKRKKIAENATAIQS 185
           C+ R  SK K++ + +S    NA+ ++V DK+   + ++ K+  +N  A+ +
Sbjct: 303 CLERFVSKEKVQYSCHSCGSKNAIKQLVFDKLPPTICMQLKRFEQNNFAMST 354


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 440 RPTFPERLRSREPIAETIEETSKGTIKLLSILRKSSPGNWKYMTSRL 300
           RP +P   +   P A  + E  +    LL +LR+ S  NW+++ SRL
Sbjct: 696 RPPYPPSSKDIRPEAPWLPEEDE---LLLLLLRRYS-FNWEFVASRL 738


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 356 LSILRKSSPGNWKYMTSRLDH 294
           L +LR +  G W Y+TS  DH
Sbjct: 107 LGVLRTALCGGWVYVTSTDDH 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,481
Number of Sequences: 5004
Number of extensions: 54963
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)