Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e07f
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 33 0.24
06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925 31 0.74
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337 31 0.74
02_01_0410 + 2996779-2997888 31 0.74
03_06_0729 - 35771936-35772050,35772469-35772995 30 1.7
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 29 3.0
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 29 3.0
06_03_0396 - 20357446-20357553,20357679-20357786,20357839-203583... 29 3.9
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 29 3.9
03_01_0065 + 529200-529438,529770-529929,530217-530299,530398-53... 29 3.9
08_02_1469 + 27345430-27345534,27345690-27345763,27345852-273459... 28 6.9
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 28 6.9
07_03_0476 - 18547223-18548187,18548743-18549958 27 9.1
02_03_0405 - 18653139-18653276,18653827-18653995,18654244-18654551 27 9.1
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 376 LVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG--SNSKGNEEL 549
L+ S ++ + LD SLS + +++ Y + I++ T+KPG SN++ + L
Sbjct: 470 LLGSNIAPLRDLDFSLSPLLAAQSMTKYNSAAPTTTGPAISMQETLKPGVFSNAQSTQNL 529
Query: 550 NTTKIVT 570
+T I T
Sbjct: 530 PSTSIAT 536
>06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925
Length = 327
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 257 PCWDVACGHPDISGPNETSCTSNFPGSFSSGCSRV 361
P W+V G D + T+ +N PG SSG S V
Sbjct: 147 PTWNVQLGRKDSRTASGTAANANLPGPASSGASLV 181
>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
Length = 386
Score = 31.1 bits (67), Expect = 0.74
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 217 LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 396
LL +V GVAAG L L + ++W+ VM F +PG L + +V +L+ +
Sbjct: 50 LLQQASVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 106
Query: 397 AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 510
I L+L K A+++Y++ + +L A V T
Sbjct: 107 LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 146
>02_01_0410 + 2996779-2997888
Length = 369
Score = 31.1 bits (67), Expect = 0.74
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 217 LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 396
LL +V GVAAG L L + ++W+ VM F +PG L + +V +L+ +
Sbjct: 33 LLQQTSVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 89
Query: 397 AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 510
I L+L K A+++Y++ + +L A V T
Sbjct: 90 LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 129
>03_06_0729 - 35771936-35772050,35772469-35772995
Length = 213
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 318 LPISRG-AFPQDAQEFDSAFAGLLNRFSYRLSGPKPLWEGRSPRHHLLYDHDSLR 479
+P SR A P + FD+A A L N+ +YR P L R H Y ++ R
Sbjct: 15 IPSSRSHALPSSSSPFDAALATLQNQIAYRFHAPDLL---RRAMTHASYSRENGR 66
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -2
Query: 297 PLMSGCPQATSQQGSGRYADHRQDGE*ILPY-ELRTRLTIELQWHFRLSSFVLILETKRP 121
P + + SQ S A R DG + E +T L + HF LSS+ ++ ++
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 120 YHIQLDLVH*ARHHYYRSILFYIWSVRHTRLSA 22
YH QL + + S + RH + A
Sbjct: 282 YHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMA 314
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -2
Query: 297 PLMSGCPQATSQQGSGRYADHRQDGE*ILPY-ELRTRLTIELQWHFRLSSFVLILETKRP 121
P + + SQ S A R DG + E +T L + HF LSS+ ++ ++
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 120 YHIQLDLVH*ARHHYYRSILFYIWSVRHTRLSA 22
YH QL + + S + RH + A
Sbjct: 282 YHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMA 314
>06_03_0396 -
20357446-20357553,20357679-20357786,20357839-20358381,
20358478-20358669,20358787-20359017
Length = 393
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 257 PCWDVACGHPDISGPNETSCTSNFPGSFSS 346
P W VA G D ++++ SN PG SS
Sbjct: 145 PTWSVALGRKDSRTASQSAANSNLPGPGSS 174
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 286 GHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGL 441
GH R +F L S +PLLV + + IG + S SG++G+
Sbjct: 272 GHMDGSRSHPHFPVTARLTSTSSDSDSLPLLVDGVRNGIGGIARSFSGELGI 323
>03_01_0065 +
529200-529438,529770-529929,530217-530299,530398-530488,
530585-530680,531107-531220,531325-531408,531493-531648,
531755-531829,532172-532278,532361-532544,532970-533158,
533372-533452,533794-533925,534302-534355,534484-534809,
534925-535030,535491-535640,535763-535909
Length = 857
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 220 LTILTVVGVAAGTLLGCGLRASGHQWSKRDVMY--FQFPGELFLRMLKSLIVPLLVSSIV 393
L + + + V + T G AS + R V+ FQFP EL L+ + + V SIV
Sbjct: 624 LDLASSLEVGSATAQASG-DASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIV 682
Query: 394 SAIGSLDLSLS-GKVGLRA 447
SA+ + +++S + GL A
Sbjct: 683 SAVQRVSMAISPSQTGLNA 701
>08_02_1469 +
27345430-27345534,27345690-27345763,27345852-27345996,
27346359-27346460
Length = 141
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 39 VSRSKYKIESNDNSDAVLNALNRVVCDKVVLFLILKRKKIAE 164
+S + KI+ N D NA + +VC V L LK++K AE
Sbjct: 59 ISMIRNKIDQYTNDDDAGNARSYLVCMFVCSVLGLKKRKCAE 100
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 204 ELRTRLTIELQWHFRLSSFVLILETKRPYHIQLDL 100
E +T L + HF LSS+ ++ ++ YH QL +
Sbjct: 254 EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV 288
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 296 H*CPDARRPHPSKVPAATPTT 234
H P RRPHP +PA P T
Sbjct: 17 HARPQPRRPHPIPIPANPPPT 37
>02_03_0405 - 18653139-18653276,18653827-18653995,18654244-18654551
Length = 204
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 549 KLLVPLGVTARFNGRHQSYSQHDRADCRGHIVDDGAETDLPRE 421
+L+ +GVT F+ RH+ QHDR R V G + + +E
Sbjct: 132 QLVHVVGVTPGFHRRHEEEEQHDR---RNRCVSAGMKCEFVQE 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,466
Number of Sequences: 37544
Number of extensions: 399108
Number of successful extensions: 1135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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