Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e07f
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   4e-20
SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   4e-19
SB_43090| Best HMM Match : SDF (HMM E-Value=0.0024)                    83   1e-16
SB_26294| Best HMM Match : DUF1443 (HMM E-Value=0.9)                   81   7e-16
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_31672| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         29   3.0  
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)                 28   5.3  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)          28   7.0  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
 Frame = +1

Query: 187 KACPKFIRENLLTILTVVGVAAGTLLGCGL-----RASGHQWSKRDVMYFQFPGELFLRM 351
           +A  + +  +L+  L + GV  G ++G  +     R +  +     +M   FPGELF+ M
Sbjct: 18  RAFYRLLNSDLMLTLILFGVVVGFVVGAIINGPINRVTDIEKQTTIIMLVGFPGELFMNM 77

Query: 352 LKSLIVPLLVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPGSNS 531
           LK LI+PL+++S++ A+ SLD   + K+G R +IYY++TT  AV+LGI LVT+++PG+  
Sbjct: 78  LKLLILPLIMASLICAVASLDAKATAKIGRRTVIYYLSTTFLAVILGIVLVTSMRPGAGG 137

Query: 532 KGN 540
           K N
Sbjct: 138 KPN 140


>SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
 Frame = +1

Query: 199 KFIRENLLTILTVVGVAAGTLLGCGL-----RASGHQWSKRDVMYFQFPGELFLRMLKSL 363
           K  +++LL IL V+GV  G ++G        R    +     ++     GELF+ MLK L
Sbjct: 20  KRCKQDLLLILIVIGVFVGFVIGFLANGPVNRIQSPEEKTTTIILIGLLGELFMAMLKML 79

Query: 364 IVPLLVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPGSNSKGNE 543
           I+PL+++S++ A+G LD S +GK+G R ++YY+ TT+ AV+LGIA+V+ I+PG   K   
Sbjct: 80  ILPLIMASLICALGVLDSSATGKIGRRTVLYYLCTTLIAVLLGIAMVSIIQPGKGDKPKG 139

Query: 544 E 546
           E
Sbjct: 140 E 140


>SB_43090| Best HMM Match : SDF (HMM E-Value=0.0024)
          Length = 283

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 5/110 (4%)
 Frame = +1

Query: 208 RENLLTILTVVGVAAGTLLGCGLRASGHQW-----SKRDVMYFQFPGELFLRMLKSLIVP 372
           + +LL    ++G   G ++G  +     Q       K  +M   FPGELF+ MLK +I+P
Sbjct: 24  KSDLLLAFIILGAVLGFVIGAIINKPIEQILTPEDRKTTIMLIGFPGELFMNMLKLVILP 83

Query: 373 LLVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG 522
           L+V+S++SA+  +D   +GK+G R +++Y  TT+ A +LG+ LV  I+PG
Sbjct: 84  LIVASLISALACMDPKATGKIGRRVLLFYFLTTISAAILGLILVLAIRPG 133


>SB_26294| Best HMM Match : DUF1443 (HMM E-Value=0.9)
          Length = 130

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 36/74 (48%), Positives = 53/74 (71%)
 Frame = +1

Query: 313 MYFQFPGELFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLG 492
           M   FPG+LF+ MLK L+VPL+V+S++ A+ +LD   S +V  R  +YY+ TT+ AV++G
Sbjct: 1   MLIGFPGDLFMNMLKLLMVPLVVASVICALAALDGRSSNRVSRRTFVYYLATTLLAVIIG 60

Query: 493 IALVTTIKPGSNSK 534
           + LVT +KPGS  K
Sbjct: 61  VVLVTFMKPGSYGK 74


>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 286 RMPAGHIPARFRPLRRPPSG 227
           R+P+G +P+R+ P RR PSG
Sbjct: 234 RLPSGRLPSRWLPSRRLPSG 253



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 286 RMPAGHIPARFRPLRRPPSG 227
           R+P+G +P+R  P RR PSG
Sbjct: 2   RLPSGRLPSRRLPSRRLPSG 21



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 286 RMPAGHIPARFRPLRRPPSG 227
           R+P+G +P+R  P RR PSG
Sbjct: 32  RLPSGRLPSRRLPSRRLPSG 51



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 286 RMPAGHIPARFRPLRRPPSG 227
           R+P+G +P+R  P RR PSG
Sbjct: 204 RLPSGWLPSRRLPSRRLPSG 223



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 286 RMPAGHIPARFRPLRRPPSG 227
           R+P+G +P+R  P RR PSG
Sbjct: 354 RLPSGWLPSRRLPSRRLPSG 373


>SB_31672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 249 GRNLAGMWPAGIRTSVVQTRRHVLPISRGAFPQDAQEFDSAFAGLLNRFSYRL 407
           GR+L  + P G    V+ TR ++  I++G  P D  +    F GL    SY +
Sbjct: 16  GRSLRSLGPDG---RVISTRWYLHTIAQGTTPPDMHDTSFCFGGLAYTQSYNI 65


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 460  MTTTVCAVMLGIALVTTIKPGSNSKGNEELNTTKI 564
            MT  VC   L + L+  I  GS S GN+   +TK+
Sbjct: 1187 MTPKVCRKALELGLLGIILDGSGSVGNDHFMSTKV 1221


>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 398 AETIEETSKGTIKLLSILRKSSPGN 324
           AE +EE S GT K++ I   S+PGN
Sbjct: 40  AELVEEVSVGTSKVVKITGVSNPGN 64


>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
          Length = 657

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 378 QQRHYQTLEHPEE--KLPGKLEVHDVSFGPLMSGCPQATSQQGSGRYADHRQDGE*ILPY 205
           QQ   Q  + PEE  K  GK E    +  P+M+  P  ++      Y  + Q+   + PY
Sbjct: 330 QQHQLQQQQKPEENKKAKGKYEPKQPNTQPMMANSPYPSNGYPGNGYQSNGQNQWRMSPY 389

Query: 204 E 202
           E
Sbjct: 390 E 390


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = +3

Query: 144 KRKKIAENATAIQS*GVSEV-HTGESTHHPDGGRRSGRNLAGMWPAGIRTSVVQTRRHVL 320
           +R   A      ++ GV+E+ HTG +   P   RRSG + A     G R      R H  
Sbjct: 298 RRGNRAHRERGARTQGVAEIGHTGSAAREPRASRRSGTHGARCENPGRRGD----RAH-- 351

Query: 321 PISRGAFPQDAQEFDSAFAGLLNRFSYRLSGPKPLW 428
              RGA  Q   E   A++ +    + R SG  P W
Sbjct: 352 -RERGARTQGVAEIGHAWSAVREPRASRRSG-TPHW 385


>SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)
          Length = 376

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 281 ARRPHPSKVPAATPTTVRMVSRFSRMNFGHALRLNCSG 168
           A+R   + +PA  P TVR+VS     N   ++   CSG
Sbjct: 288 AQRALKNMIPADCPYTVRVVSEVLESNGSSSMATVCSG 325


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 306  RRHVLPISRGAFPQDAQEFDSAFAGLLNRFSYRLSGPKPLWEGRSP 443
            R HV   +R     DA     AFA ++  F++ +S  + +WE RSP
Sbjct: 979  RAHVYQ-ARSLIGSDASGLSDAFARVI--FTHLVSDTRVIWETRSP 1021


>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 564 DLRGIKLLVPLGVTAR 517
           D+RG++LL P G+TAR
Sbjct: 71  DIRGLELLTPSGITAR 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,457,949
Number of Sequences: 59808
Number of extensions: 457298
Number of successful extensions: 1447
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)