Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e07f
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11820.1 68414.m01358 glycosyl hydrolase family 17 protein si... 29 1.9
At1g10000.1 68414.m01128 expressed protein 29 2.5
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 28 4.3
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 28 4.3
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 28 4.3
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 28 4.3
At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative si... 28 4.3
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa... 28 4.3
At5g19980.1 68418.m02378 integral membrane family protein contai... 27 7.6
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 27 7.6
At1g33250.1 68414.m04110 fringe-related protein + weak similarit... 27 7.6
>At1g11820.1 68414.m01358 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 511
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 397 AIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTI 513
AIGS + + + +G + YY T + A+ +G ++TT+
Sbjct: 104 AIGSSNSTAASWIGRNVVAYYPETLITAISVGDEVLTTV 142
>At1g10000.1 68414.m01128 expressed protein
Length = 303
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 346 RMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGL 441
R + +P LV+SI A L L +SG +GL
Sbjct: 264 RSISFQFIPRLVNSIADAAAKLSLCISGNIGL 295
>At5g22770.3 68418.m02661 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 452 MMARRPTFPERLRSREPIAETIEETS-KGTIKLLSILRKSSPGNWKYMTSRLDH*CPDAR 276
++A P FPER S AE +E+T+ + IKL + + P N + + P
Sbjct: 587 VLAEMPKFPERQSSLIKKAENVEDTADQSAIKLRA---QQQPSNAMVLADQQ----PVNG 639
Query: 275 RPHPSKVPAATPTT 234
P P KVP + +T
Sbjct: 640 APPPLKVPILSGST 653
>At5g22770.2 68418.m02660 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 452 MMARRPTFPERLRSREPIAETIEETS-KGTIKLLSILRKSSPGNWKYMTSRLDH*CPDAR 276
++A P FPER S AE +E+T+ + IKL + + P N + + P
Sbjct: 587 VLAEMPKFPERQSSLIKKAENVEDTADQSAIKLRA---QQQPSNAMVLADQQ----PVNG 639
Query: 275 RPHPSKVPAATPTT 234
P P KVP + +T
Sbjct: 640 APPPLKVPILSGST 653
>At5g22770.1 68418.m02659 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 452 MMARRPTFPERLRSREPIAETIEETS-KGTIKLLSILRKSSPGNWKYMTSRLDH*CPDAR 276
++A P FPER S AE +E+T+ + IKL + + P N + + P
Sbjct: 587 VLAEMPKFPERQSSLIKKAENVEDTADQSAIKLRA---QQQPSNAMVLADQQ----PVNG 639
Query: 275 RPHPSKVPAATPTT 234
P P KVP + +T
Sbjct: 640 APPPLKVPILSGST 653
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 6 RSRQPEQTDACVSRSKYKIESNDNSDAVLNAL 101
+ R+PE T A ++R+KY++ N +L L
Sbjct: 397 KQRRPEATQAYITRNKYQLHEAFNGSFILEKL 428
>At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative
similar to NhaD [Vibrio parahaemolyticus]
gi|3123728|dbj|BAA25994; Na+/H+ aniporter (NhaD) family
member, PMID:11500563
Length = 420
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +1
Query: 196 PKFIRENLLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPL 375
P R+ L ++ + A G G + W + F LFL SL+VPL
Sbjct: 129 PSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGHISTFSTIKNLFLPSAISLVVPL 188
Query: 376 LVSSIVSAIGSLDLS 420
+ S+ S + + L+
Sbjct: 189 ALMSLTSEVHGMGLN 203
>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
family protein similar to inositol 1,4,5-trisphosphate
5-phosphatase (GI:4688596) [Arabidopsis thaliana]
Length = 861
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 249 GRNLAGMWPAGIRTSVVQTRRHVLPISRGAFPQDAQEFDSAFAGLLNRFSYRLSG 413
G+NL+ AG+ TS T+ + +P S GA + + F+YRL G
Sbjct: 743 GQNLSNAAAAGVSTSAYTTKSNTIP-STGAEEIKSDLAAADMVAFFGDFNYRLFG 796
>At5g19980.1 68418.m02378 integral membrane family protein contains
Pfam profile: PF00892 Integral membrane protein; similar
to LPG2 protein (GI:9998817) [Leishmania mexicana]
Length = 341
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 376 LVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLG 492
L SS+++ I L ++ GL + Y+T TV +LG
Sbjct: 23 LCSSLLAVINKLAITYFNYPGLLTALQYLTCTVAVYLLG 61
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 366 YQTLEHPEEKLPGKLEVHDVSFGPLMSGCPQA 271
Y + PEEK VHDVS L+ PQA
Sbjct: 650 YMAYKGPEEKKESSNVVHDVSNQNLLPAIPQA 681
>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 548
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 384 LNRFSYRLSGPKPLWEGRSPRHHLLYDHDSLRGHV 488
+N + ++G LWE R L + +RGHV
Sbjct: 131 MNHLMFGIAGSSQLWERRKELVRLWWKPSQMRGHV 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,078
Number of Sequences: 28952
Number of extensions: 307710
Number of successful extensions: 861
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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